{"id":"W2120215662","doi":"10.1128/jcm.05676-11","title":"Emergence of a New Swine H3N2 and Pandemic (H1N1) 2009 Influenza A Virus Reassortant in Two Canadian Animal Populations, Mink and Swine","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nova Scotia Department of Agriculture; Hôpital Saint-François d'Assise; Université de Montréal","funders":"","keywords":"Mink; Virology; Neuraminidase; Virus; Biology; Pandemic; Influenza A virus; Hemagglutinin (influenza); H5N1 genetic structure; Genome; Reassortment; Gene; Coronavirus disease 2019 (COVID-19); Genetics; Infectious disease (medical specialty); Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001723963,0.0001630556,0.001030011,0.0004001014,0.00004141689,0.000004052362,0.0001305573,0.0001949542,0.0002158259],"category_scores_gemma":[0.003226412,0.0001221524,0.0001236804,0.0002092799,0.0003587684,0.00009047337,0.00008780507,0.000714004,0.000004906354],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003693004,"about_ca_system_score_gemma":0.0007592089,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.03924242,"about_ca_topic_score_gemma":0.09409209,"domain_scores_codex":[0.9971773,0.0002139314,0.001915797,0.0002219463,0.00008341799,0.0003875869],"domain_scores_gemma":[0.9981549,0.0002637321,0.000593652,0.0001671907,0.0003152934,0.0005052435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002584909,0.0001292083,0.9438956,0.00003163976,0.0001540597,0.0001209196,0.0003680138,6.514512e-7,0.04534715,0.0000565551,0.002912939,0.004398291],"study_design_scores_gemma":[0.004851678,0.002036611,0.982668,0.00021661,0.0001200261,0.0007031256,0.0001348443,0.0000143163,0.000555375,0.0003842016,0.008190729,0.0001244564],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907469,0.007949104,0.000005551169,0.00073353,0.0001510408,0.0001992593,0.00003941078,0.00000397081,0.0001712661],"genre_scores_gemma":[0.9925969,0.002997642,0.002817535,0.001265108,0.0002460523,0.000001311988,0.000002682362,0.00001278932,0.0000600038],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05484967,"threshold_uncertainty_score":0.9671553,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3478194589750054,"score_gpt":0.502592539920526,"score_spread":0.1547730809455206,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}