{"id":"W2120368598","doi":"10.1530/rep-10-0477","title":"Comprehensive cross production system assessment of the impact of <i>in vitro</i> microenvironment on the expression of messengers and long non-coding RNAs in the bovine blastocyst","year":2011,"lang":"en","type":"article","venue":"Reproduction","topic":"Reproductive Biology and Fertility","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"L'Alliance Boviteq; Université Laval; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Blastocyst; Biology; Embryo; Gene expression; Gene; In vitro; Microarray; Cell biology; In vivo; Computational biology; In vitro maturation; Genetics; Gene expression profiling; Microarray analysis techniques; Andrology; Oocyte; Embryogenesis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00153102,0.0001382914,0.0003264695,0.00007141808,0.00007021461,0.00000257323,0.0001103565,0.0000699537,0.000006503563],"category_scores_gemma":[0.0001748721,0.00006395082,0.0001024418,0.0002237352,0.0004340697,0.00007000809,0.0000538609,0.0002670082,3.01868e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001549719,"about_ca_system_score_gemma":0.00004414141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002244208,"about_ca_topic_score_gemma":0.00000262081,"domain_scores_codex":[0.9982956,0.000407498,0.0004571948,0.0004927394,0.0002127752,0.0001341803],"domain_scores_gemma":[0.9983853,0.00006099582,0.0004040088,0.001032102,0.0001019293,0.00001571545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00280241,0.0003993147,0.1407673,0.0002586658,0.00003347732,0.000001206438,0.001620278,0.0002330413,0.8535187,0.000009142816,0.0000209212,0.0003355014],"study_design_scores_gemma":[0.0002156066,0.0002064845,0.5224718,0.0001751149,0.00001732612,0.00003066503,0.0007326764,0.00002843705,0.4760846,0.000006837877,0.0000038198,0.00002653814],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976276,0.0002736642,0.00004206484,0.0003407521,0.0002282631,0.001324239,0.000004200535,0.000005211712,0.0001539716],"genre_scores_gemma":[0.9997179,0.00005765388,0.00005570393,0.000006492441,0.00009276286,0.00003578605,0.000003274495,0.000008095166,0.00002233126],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3817046,"threshold_uncertainty_score":0.2607839,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0328756022743284,"score_gpt":0.3041907784069448,"score_spread":0.2713151761326164,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}