{"id":"W2120515009","doi":"10.1099/mic.0.29170-0","title":"Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti","year":2006,"lang":"en","type":"article","venue":"Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Genome Canada; Ontario Innovation Trust","keywords":"Sinorhizobium meliloti; Replicon; Biology; Nitrogen fixation; Sinorhizobium; Gene; Genetics; Bacteria; Microbiology; Population; Plasmid; Rhizobia","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002110822,0.0001581194,0.0002076715,0.001209988,0.000275129,0.0001988135,0.0001481734,0.0001904754,0.0003545952],"category_scores_gemma":[0.0005270161,0.0001202047,0.0002690063,0.0007397188,0.0002461533,0.0001280702,0.0001943224,0.0002173553,0.0000952472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002780925,"about_ca_system_score_gemma":0.000166029,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001819208,"about_ca_topic_score_gemma":0.003249304,"domain_scores_codex":[0.99985,0.00001937019,0.00001458266,0.00006299939,0.00002852987,0.00002452033],"domain_scores_gemma":[0.9995812,0.0001190299,0.0001556552,0.00003548927,0.00004429332,0.00006440726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008099297,0.00009268916,0.3670047,0.0001297035,0.0002185277,0.0003992148,0.001066572,0.0009751983,0.6129501,0.0003789276,0.00008188219,0.01589259],"study_design_scores_gemma":[0.00001411986,0.0001371607,0.987233,0.000006773046,0.00006392835,0.0004376704,0.0002181071,0.002424738,0.008850791,0.0001802007,0.0004205839,0.00001287503],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999485,0.00007408122,0.0002428745,0.000003989114,5.846134e-7,0.000002323286,0.0000946842,0.000003277091,0.00009313282],"genre_scores_gemma":[0.9990124,0.00006188035,0.0004383662,0.000004688412,0.000001335772,0.00000566634,0.0004071278,0.000001707551,0.00006677946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001819208,"threshold_uncertainty_score":0.003617227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01950583039047365,"score_gpt":0.2331787591957672,"score_spread":0.2136729288052936,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}