{"id":"W2120542866","doi":"10.1534/g3.115.017830","title":"CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in<i>Saccharomyces cerevisiae</i>","year":2015,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Saccharomyces cerevisiae; Protein subcellular localization prediction; Proteome; Biology; Computational biology; Yeast; Subcellular localization; Proteomics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001444187,0.0002798233,0.0005334478,0.0003043199,0.00003645821,0.00004284789,0.0002827929,0.0001716233,0.00002120961],"category_scores_gemma":[0.0000129882,0.0002972175,0.0001145487,0.0007318622,0.0001752987,0.000009872453,0.0002905034,0.00006951514,0.000001782174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002809532,"about_ca_system_score_gemma":0.0001024796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005470978,"about_ca_topic_score_gemma":0.0006349279,"domain_scores_codex":[0.9981309,0.0001765,0.0005739178,0.0006208369,0.0002412272,0.0002565887],"domain_scores_gemma":[0.9984103,0.00001660136,0.0003065323,0.0007656164,0.0003623044,0.0001386441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004366884,0.000062284,0.3173139,0.00005685688,0.0006392068,0.0000119251,0.0001588809,0.002472681,0.6597774,0.000002525958,0.00008100247,0.01937968],"study_design_scores_gemma":[0.001160359,0.0002238714,0.01704201,0.00006877656,0.00118685,0.000007471381,0.0008649982,0.06761174,0.8955756,0.00005372521,0.01552587,0.0006786765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8198154,0.1658204,0.01370672,0.0000116545,0.00001480872,0.0003499959,0.0002022684,0.00004801101,0.00003075457],"genre_scores_gemma":[0.9597684,0.02842067,0.008895577,0.00007557639,0.00004633179,0.00003132025,0.002705629,0.00003354074,0.00002302607],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3002719,"threshold_uncertainty_score":0.999948,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01441146631423223,"score_gpt":0.2633836996257339,"score_spread":0.2489722333115017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}