{"id":"W2120681729","doi":"10.1038/msb.2013.21","title":"Nucleotide degradation and ribose salvage in yeast","year":2013,"lang":"en","type":"article","venue":"Molecular Systems Biology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Division of Chemical, Bioengineering, Environmental, and Transport Systems; Ontario Genomics Institute; Air Force Office of Scientific Research; Ontario Genomics; Genome Canada; Princeton University; U.S. Department of Energy; National Cancer Institute; National Institutes of Health; Government of Canada; National Science Foundation","keywords":"Transaldolase; Ribose; Biology; Biochemistry; Pentose phosphate pathway; Nucleotide salvage; Nucleotide; Purine nucleoside phosphorylase; Glyceraldehyde; Hyperthermophile; Purine; Dehydrogenase; Glycolysis; Metabolism; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001168377,0.0004648438,0.000308031,0.0002825414,0.0001908034,0.0004409893,0.0002073215,0.0002038662,0.0003155383],"category_scores_gemma":[0.00007598138,0.000153786,0.0002521658,0.0002911113,0.0001765553,0.0002130975,0.0003323437,0.0003246704,0.0003029428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004467457,"about_ca_system_score_gemma":0.0003117456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00152214,"about_ca_topic_score_gemma":0.001656746,"domain_scores_codex":[0.9999005,0.00001443202,0.00001102543,0.00003069645,0.00003226201,0.00001110372],"domain_scores_gemma":[0.9999598,0.000004024564,0.00001161859,0.000006679038,0.000008139384,0.000009746055],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002564912,0.00002527273,0.0007237503,0.0001842451,0.00001446263,0.0001925691,0.0000205438,0.0007968899,0.9821411,0.0009085888,0.0001689093,0.01456698],"study_design_scores_gemma":[0.00001552625,0.0001473116,0.004409863,0.00001527063,0.00002564026,0.000638767,0.00002810478,0.003709767,0.9804437,0.000814172,0.009738631,0.00001321385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9081917,0.03609286,0.04354762,0.0005115483,0.0002035654,0.00008238055,0.003342019,0.001344513,0.00668383],"genre_scores_gemma":[0.9548826,0.01194082,0.02682077,0.0001185087,0.00002297506,0.00005623575,0.002719884,0.00007688707,0.003361332],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00152214,"threshold_uncertainty_score":0.00324142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008117839632453707,"score_gpt":0.2465907948239624,"score_spread":0.2384729551915087,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}