{"id":"W2120692714","doi":"10.1371/journal.pgen.1000608","title":"Tissue Effect on Genetic Control of Transcript Isoform Variation","year":2009,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University and Génome Québec Innovation Centre; McGill University","funders":"Uppsala Universitet; Akademiska Sjukhuset; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Erasmus Medisch Centrum; European Commission; ZonMw; Canadian Institutes of Health Research; Genome Canada","keywords":"Biology; Gene isoform; Genome-wide association study; Genetics; Genetic variation; Gene; Single-nucleotide polymorphism; Transcriptome; Genetic association; Phenotype; Gene expression; Computational biology; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002154354,0.000192174,0.000299911,0.00005707131,0.00005958052,0.000007941443,0.0001876924,0.0002502041,0.00002703181],"category_scores_gemma":[0.0001587288,0.0001793709,0.0001048747,0.00008822619,0.00004092166,0.000001326032,0.00001266631,0.00008414375,0.00002029573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001693403,"about_ca_system_score_gemma":0.00004144418,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003012651,"about_ca_topic_score_gemma":0.000004946383,"domain_scores_codex":[0.9986875,0.0001612377,0.0003787402,0.0003123276,0.0001633969,0.0002967988],"domain_scores_gemma":[0.9992045,0.00004986787,0.0001658586,0.0003949505,0.000104166,0.00008063224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001048104,0.0001799242,0.008512179,0.00001652254,0.0000960071,9.975478e-7,0.00006486983,0.002036437,0.972437,0.00006023469,0.0004311789,0.01605988],"study_design_scores_gemma":[0.001854429,0.008119627,0.2272829,0.00001719645,0.0001711143,0.000006353217,0.000009397017,0.002663201,0.7554526,0.0005738655,0.003542221,0.000307015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9826242,0.0009203661,0.01434182,0.0003151673,0.0001351865,0.0004110239,0.00003608857,0.00001386492,0.001202246],"genre_scores_gemma":[0.9968274,0.0001585768,0.001849116,0.0006997853,0.000229972,0.00001897839,0.00005218466,0.00001922933,0.0001447053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2187707,"threshold_uncertainty_score":0.7314535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007864351589389668,"score_gpt":0.2418892025376692,"score_spread":0.2340248509482795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}