{"id":"W2120817193","doi":"10.1093/bioinformatics/bts273","title":"MicrobeDB: a locally maintainable database of microbial genomic sequences","year":2012,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Simon Fraser University; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Upload; Computer science; Parsing; Genome; Bacterial genome size; Key (lock); Database; Automation; Interface (matter); World Wide Web; Biology; Programming language; Genetics; Operating system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002232608,0.0001375143,0.0001495187,0.00003769477,0.00006469061,0.00001216,0.0001984908,0.00007864047,0.00001194724],"category_scores_gemma":[0.00002978725,0.0001237666,0.00007226078,0.00005647391,0.0001195106,0.000003235974,0.0002346623,0.00004300672,0.00002566853],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001476639,"about_ca_system_score_gemma":0.0000848853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002817539,"about_ca_topic_score_gemma":0.000009857248,"domain_scores_codex":[0.9991775,0.00001524834,0.0003174975,0.00009040262,0.00007047172,0.0003289219],"domain_scores_gemma":[0.9994042,0.000008072482,0.0001428364,0.0002957036,0.00006898121,0.0000802068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003050362,0.0000490307,0.004649238,0.000114296,0.00006908812,2.909866e-7,0.0003802643,0.00004744539,0.9910097,0.0003410942,0.002488054,0.000820989],"study_design_scores_gemma":[0.001074272,0.0004030221,0.007548879,0.0000498635,0.00009077328,0.00009441341,0.001873787,0.0003751152,0.8299965,0.00008254335,0.1577809,0.0006299596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926333,0.002129174,0.00281249,0.00003041227,0.0002136857,0.0001815996,0.0001470716,0.000003406888,0.001848815],"genre_scores_gemma":[0.9684742,0.0004814106,0.03033793,0.0002306328,0.0001818266,0.000006953917,0.00009295112,0.00001308963,0.0001809713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1610132,"threshold_uncertainty_score":0.5047054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01155662655029321,"score_gpt":0.2262320952025418,"score_spread":0.2146754686522486,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}