{"id":"W2120896896","doi":"10.1016/j.ygeno.2007.06.009","title":"Spontaneous conversion between mutL and 6 bpΔmutL in Salmonella typhimurium LT7: Association with genome diversification and possible roles in bacterial adaptation","year":2007,"lang":"en","type":"article","venue":"Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Genetics; Genome; DNA mismatch repair; Gene; Mutant; DNA repair","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003207713,0.0001091687,0.0001312602,0.00007518296,0.00005910695,0.00002133333,0.00005176051,0.0001331651,0.000001465879],"category_scores_gemma":[0.00001801092,0.0001145374,0.00001316018,0.00005839332,0.00003371407,0.000002359955,0.00006824511,0.0000576217,0.000001279655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008762834,"about_ca_system_score_gemma":0.00003960654,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001452783,"about_ca_topic_score_gemma":0.001356644,"domain_scores_codex":[0.9992907,0.00002739155,0.000174201,0.0002564372,0.00006303216,0.0001882501],"domain_scores_gemma":[0.9996942,0.00002778543,0.00009880574,0.00009350942,0.00004222448,0.00004351726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000471752,0.00002677756,0.4063115,0.00001630871,0.00004382772,0.00001971881,0.001510665,0.0002241971,0.5890468,0.00001628714,0.000006790339,0.002305373],"study_design_scores_gemma":[0.001238942,0.0002320266,0.9820291,0.000006636918,0.00002427402,0.00002117561,0.00104321,0.00009227304,0.01287559,0.00006073587,0.002178624,0.0001973702],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987559,0.0006206056,0.0001491563,0.00007342456,0.00005225314,0.0001902287,0.0000276811,0.000002037138,0.0001287666],"genre_scores_gemma":[0.9982693,0.0008027553,0.0005930479,0.00002810692,0.0001205784,0.000002708528,0.000111219,0.00001190085,0.00006037609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5761713,"threshold_uncertainty_score":0.4670699,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007936278074468743,"score_gpt":0.1962815579713003,"score_spread":0.1883452798968316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}