{"id":"W2121091764","doi":"10.1016/j.gene.2008.06.015","title":"High rates of lateral gene transfer are not due to false diagnosis of gene absence","year":2008,"lang":"en","type":"article","venue":"Gene","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Genome; Genetics; Gene prediction; Cutoff; Gene dosage; Human genome; Gene density; Computational biology; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004018709,0.0006795864,0.0006834444,0.002288907,0.0006513266,0.001035315,0.0009271199,0.001504626,0.004370917],"category_scores_gemma":[0.01977887,0.0004481872,0.0003155455,0.001083902,0.00236628,0.001625186,0.001139792,0.001526664,0.001734923],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000242285,"about_ca_system_score_gemma":0.0001499463,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001631119,"about_ca_topic_score_gemma":0.0002021121,"domain_scores_codex":[0.9952275,0.001538587,0.0004440875,0.000748427,0.001612673,0.0004288119],"domain_scores_gemma":[0.9583542,0.02933006,0.003766874,0.005338929,0.001979847,0.001230063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002481443,0.0003841783,0.3008071,0.0006554435,0.0002148945,0.005629866,0.001008553,0.0008852611,0.6402276,0.004313741,0.0009307028,0.04246109],"study_design_scores_gemma":[0.0000817832,0.001025775,0.2593057,0.0001262939,0.0003128572,0.03670977,0.001080818,0.01035454,0.6719931,0.01147461,0.007446507,0.00008829778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9459082,0.001077689,0.04224105,0.0003840455,0.0002096536,0.0000680634,0.0004630227,0.0003318384,0.009316437],"genre_scores_gemma":[0.9895002,0.0003047956,0.008126887,0.0001900515,0.00005672724,0.00004934342,0.0005042673,0.0000849049,0.001182731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004370917,"threshold_uncertainty_score":0.02125323,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01812124295107378,"score_gpt":0.2284144677353676,"score_spread":0.2102932247842938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}