{"id":"W2121278089","doi":"10.1093/dnares/dsp028","title":"Genome-Wide Screening of Genes Whose Enhanced Expression Affects Glycogen Accumulation in Escherichia coli","year":2010,"lang":"en","type":"article","venue":"DNA Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; European Regional Development Fund; Keio University","keywords":"Biology; Glycogen; Gene; Escherichia coli; Phenotype; Gene expression; Plasmid; Genome; Glycogen synthase; Genetics; Biochemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006496694,0.0001130316,0.0001511382,0.0001652508,0.00007147506,0.00002297025,0.0003237431,0.0004310746,0.00004207864],"category_scores_gemma":[0.0002749342,0.0001064893,0.00004529977,0.0002808011,0.0001657821,0.000004481185,0.0003537884,0.0003215315,0.000006261062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000824091,"about_ca_system_score_gemma":0.00007806779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004434027,"about_ca_topic_score_gemma":0.0002314353,"domain_scores_codex":[0.9987325,0.0001378779,0.0001925102,0.0003536388,0.0002152964,0.0003681964],"domain_scores_gemma":[0.9992418,0.00004107014,0.00006508386,0.000428151,0.0001542257,0.00006962273],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001949643,0.00005616002,0.004353569,0.00001987258,0.000008817487,0.000002008219,0.00003342675,0.00002475179,0.9902858,0.00001415919,0.00002824701,0.0049782],"study_design_scores_gemma":[0.0004589435,0.0002400776,0.05156979,0.000014827,0.000001758402,6.978022e-7,0.00003833471,0.00006586042,0.9412819,0.00004986066,0.006169566,0.000108362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984717,0.0002604161,0.0004599497,0.0001054543,0.0001012961,0.0003248034,0.000008297772,0.000008570823,0.0002594977],"genre_scores_gemma":[0.9966753,0.0002168207,0.002659142,0.00001535647,0.0001614009,0.00003435808,0.00008513362,0.00002090945,0.000131574],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0490039,"threshold_uncertainty_score":0.4342509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03856990748022368,"score_gpt":0.3422126283332029,"score_spread":0.3036427208529792,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}