{"id":"W2121293808","doi":"10.1093/nar/gkh477","title":"SuperPose: a simple server for sophisticated structural superposition","year":2004,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":632,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Prairie; Genome Canada","keywords":"Biology; Superposition principle; Simple (philosophy); Web server; Pairwise comparison; Protein Data Bank (RCSB PDB); Sequence (biology); Range (aeronautics); Quaternion; Interface (matter); Computer science; Artificial intelligence; Mathematics; Engineering; World Wide Web; Genetics; The Internet; Geometry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001962011,0.002432901,0.003057433,0.002422726,0.001860749,0.00308824,0.007194354,0.001671287,0.1009638],"category_scores_gemma":[0.004201079,0.003112358,0.002205814,0.002811932,0.0007446493,0.004550395,0.004633196,0.004666516,0.07989548],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008954177,"about_ca_system_score_gemma":0.001743117,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001906654,"about_ca_topic_score_gemma":0.002752251,"domain_scores_codex":[0.998645,0.0002453759,0.0001089491,0.0002402983,0.0006350531,0.0001254453],"domain_scores_gemma":[0.9985655,0.0004207628,0.00009129898,0.0004018431,0.0003220372,0.0001986473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001112197,0.0003258587,0.001396654,0.001357133,0.0004865948,0.0007069171,0.0003772929,0.006607659,0.03870258,0.01573682,0.7577634,0.175427],"study_design_scores_gemma":[0.000858476,0.000217707,0.002660703,0.0002139619,0.0001987626,0.002296258,0.000146093,0.1603763,0.06501752,0.04682769,0.7206689,0.0005176159],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.004595707,0.001038956,0.5052715,0.0003248127,0.0005016471,0.0004198069,0.02846897,0.444751,0.01462772],"genre_scores_gemma":[0.04481299,0.001913202,0.6556992,0.0007402852,0.0003588902,0.001801329,0.1476869,0.124883,0.02210409],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.1009638,"threshold_uncertainty_score":0.3377576,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02638606363808241,"score_gpt":0.3390589192637672,"score_spread":0.3126728556256848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}