{"id":"W2121293808","doi":"10.1093/nar/gkh477","title":"SuperPose: a simple server for sophisticated structural superposition","year":2004,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":632,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Prairie; Genome Canada","keywords":"Biology; Superposition principle; Simple (philosophy); Web server; Pairwise comparison; Protein Data Bank (RCSB PDB); Sequence (biology); Range (aeronautics); Quaternion; Interface (matter); Computer science; Artificial intelligence; Mathematics; Engineering; World Wide Web; Genetics; The Internet; Geometry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003179046,0.0001465235,0.0001322602,0.00008009197,0.0003202703,0.00006217652,0.0003286449,0.0002447809,0.00005544967],"category_scores_gemma":[0.0002050626,0.0001336701,0.00009411096,0.0001874695,0.0002050995,0.000009432741,0.0001702106,0.0002107902,0.00002362698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007887842,"about_ca_system_score_gemma":0.0001719081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005949765,"about_ca_topic_score_gemma":0.00006321324,"domain_scores_codex":[0.9985009,0.0000622098,0.0001729002,0.0004172017,0.0003164479,0.0005303641],"domain_scores_gemma":[0.9990606,0.00001981114,0.00002095874,0.0004388998,0.000326959,0.0001327827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000436806,0.00003598885,0.0009497101,0.0000592739,0.00005584452,0.00000783505,0.00008709951,0.0001182905,0.9809647,0.01285882,0.001007689,0.003417999],"study_design_scores_gemma":[0.006599579,0.003326875,0.01667189,0.00004656799,0.00004753092,0.0001497451,0.000308878,0.002036561,0.7607983,0.1589687,0.05002316,0.001022154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943679,0.0002171318,0.003645037,0.0005199357,0.00007415567,0.0006109607,0.0001001766,0.00002607992,0.0004386156],"genre_scores_gemma":[0.9952812,0.00002726188,0.003136115,0.0001530818,0.0003585903,0.00008331411,0.0006927791,0.00003976307,0.0002279597],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2201663,"threshold_uncertainty_score":0.5450907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02638606363808241,"score_gpt":0.3390589192637672,"score_spread":0.3126728556256848,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}