{"id":"W2121432800","doi":"10.1128/jb.00852-10","title":"The <i>Burkholderia cenocepacia</i> LysR-Type Transcriptional Regulator ShvR Influences Expression of Quorum-Sensing, Protease, Type II Secretion, and <i>afc</i> Genes","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"University of North Carolina at Chapel Hill; Cardiff University; Canadian Institutes of Health Research; Cystic Fibrosis Foundation Therapeutics","keywords":"Burkholderia cenocepacia; Biology; Quorum sensing; Regulator; Secretion; Transcriptional regulation; Gene; Genetics; Burkholderia; Microbiology; Gene expression; Bacteria; Virulence; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005406459,0.000165168,0.0002967226,0.00005779978,0.0002860265,0.00003136325,0.0002404105,0.0002117451,0.00003193716],"category_scores_gemma":[0.0004290864,0.000107496,0.0000915495,0.00008954809,0.0006142951,0.00002008504,0.0001559932,0.0002623571,8.658502e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008053137,"about_ca_system_score_gemma":0.000230516,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008293942,"about_ca_topic_score_gemma":0.00002913677,"domain_scores_codex":[0.9986869,0.0001739597,0.0004990459,0.0001980074,0.000184995,0.0002570575],"domain_scores_gemma":[0.99843,0.00004545792,0.0004281736,0.0002382229,0.0007490983,0.0001091014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000867261,0.00003013882,0.004408127,0.0000214523,0.00008184476,0.000003368171,0.00009581769,0.000002860985,0.9921478,0.0000450133,0.001082577,0.001213733],"study_design_scores_gemma":[0.0007103075,0.00171854,0.05541671,0.00005004937,0.00003258944,0.0003533832,0.0001235867,0.000007986297,0.800533,0.0002085817,0.1406808,0.0001644786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996047,0.002149715,0.00003258376,0.0007419119,0.0008147116,0.0001500288,0.00001485121,0.000003747923,0.00004544227],"genre_scores_gemma":[0.9960111,0.00211042,0.001099493,0.00009606862,0.0005345783,0.000002238522,0.00001642184,0.0000154639,0.0001142179],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1916148,"threshold_uncertainty_score":0.4383561,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01070415247763233,"score_gpt":0.2589967047855775,"score_spread":0.2482925523079451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}