{"id":"W2121432800","doi":"10.1128/jb.00852-10","title":"The <i>Burkholderia cenocepacia</i> LysR-Type Transcriptional Regulator ShvR Influences Expression of Quorum-Sensing, Protease, Type II Secretion, and <i>afc</i> Genes","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"University of North Carolina at Chapel Hill; Cardiff University; Canadian Institutes of Health Research; Cystic Fibrosis Foundation Therapeutics","keywords":"Burkholderia cenocepacia; Biology; Quorum sensing; Regulator; Secretion; Transcriptional regulation; Gene; Genetics; Burkholderia; Microbiology; Gene expression; Bacteria; Virulence; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001310629,0.0003080304,0.000212848,0.000195623,0.0001081344,0.0004171716,0.0001312279,0.000165207,0.0006725361],"category_scores_gemma":[0.0002305927,0.0001290666,0.0002158164,0.0001299277,0.0001808414,0.0001361957,0.0002482055,0.0003315017,0.0002651663],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002845605,"about_ca_system_score_gemma":0.0001735168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001815233,"about_ca_topic_score_gemma":0.001536482,"domain_scores_codex":[0.9997228,0.00004637734,0.00002134899,0.00007142338,0.00006968401,0.00006836064],"domain_scores_gemma":[0.999805,0.00005442744,0.00006437888,0.0000195286,0.00002313047,0.00003356063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002895535,0.00000539976,0.0003341835,0.000007836977,0.000001572,0.00001779885,0.000007902352,0.00002591559,0.9991317,0.00001724767,0.00001443088,0.0004071602],"study_design_scores_gemma":[0.00001184873,0.0001367479,0.04320053,0.00001138362,0.0000193103,0.0003114683,0.0001215561,0.00185169,0.9524866,0.00006024922,0.00177694,0.0000116162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956896,0.000794636,0.001562296,0.00009629159,0.00001649196,0.000007473997,0.0005564188,0.00008395282,0.001192904],"genre_scores_gemma":[0.9976814,0.0001945931,0.0007282442,0.00005078526,0.000004763026,0.000006401838,0.0004794623,0.0000183683,0.0008359942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001815233,"threshold_uncertainty_score":0.003609359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01070415247763233,"score_gpt":0.2589967047855775,"score_spread":0.2482925523079451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}