{"id":"W2121653135","doi":"10.1093/bioinformatics/btr472","title":"Conserved and differential gene interactions in dynamical biological systems","year":2011,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Core Research for Evolutional Science and Technology; National Cancer Institute; U.S. Department of Agriculture; New Mexico State University; National Science Foundation","keywords":"Computational biology; Differential (mechanical device); Gene; Biology; Computer science; Genetics; Physics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001499933,0.0008559516,0.0005494255,0.0008609007,0.000557156,0.0007639909,0.001034809,0.0009788456,0.004698263],"category_scores_gemma":[0.007388131,0.0003917853,0.00101038,0.0007551468,0.001242297,0.001123306,0.0011474,0.00106021,0.000795005],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001014584,"about_ca_system_score_gemma":0.0008884926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003280628,"about_ca_topic_score_gemma":0.001676653,"domain_scores_codex":[0.9992313,0.000266577,0.00005867369,0.0002085061,0.0001941501,0.00004072546],"domain_scores_gemma":[0.9962338,0.00285861,0.0003079474,0.0002657431,0.0002373509,0.00009659243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0001380202,0.0000609024,0.007114871,0.0004245893,0.00006811334,0.0003346761,0.0002324338,0.8385136,0.008108025,0.1181848,0.002630219,0.02418967],"study_design_scores_gemma":[0.0000143817,0.00002311549,0.0007732294,0.00001924679,0.00001386614,0.00007407843,0.00001567627,0.9603227,0.001987674,0.03446723,0.002274705,0.00001410873],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.03933968,0.0003272252,0.9530129,0.0005164359,0.00004226049,0.00009745461,0.001675239,0.001992716,0.002996142],"genre_scores_gemma":[0.5414862,0.0005348735,0.4509943,0.0001740467,0.00007468198,0.0005436824,0.003354543,0.0006542626,0.002183455],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004698263,"threshold_uncertainty_score":0.01571733,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02893718377708309,"score_gpt":0.2377651323972002,"score_spread":0.2088279486201171,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}