{"id":"W2121899130","doi":"10.1093/nar/gkl563","title":"The distinctive signatures of promoter regions and operon junctions across prokaryotes","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"Wilfrid Laurier University","keywords":"Operon; Biology; Genome; Gene; Genetics; Transcription (linguistics); Phylogenetic tree; Computational biology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002007728,0.0001875228,0.0002926583,0.0004454734,0.0002370128,0.0004000285,0.0001169032,0.0001881439,0.0006500949],"category_scores_gemma":[0.001253379,0.0002080594,0.0002181842,0.0002922553,0.0002694594,0.0003070116,0.0003627825,0.000302597,0.0004025856],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001401969,"about_ca_system_score_gemma":0.0002699353,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004493144,"about_ca_topic_score_gemma":0.0008150588,"domain_scores_codex":[0.9997764,0.00003315281,0.00001413547,0.000085274,0.00006222854,0.000028755],"domain_scores_gemma":[0.999227,0.0002759491,0.000190543,0.00008541919,0.0001303349,0.00009066743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001761809,0.00001375543,0.01126434,0.0001509939,0.00001070471,0.0001334807,0.0001697479,0.000486931,0.97465,0.0004883811,0.00006059333,0.01239492],"study_design_scores_gemma":[0.00003234419,0.0004603847,0.2240671,0.000125253,0.000130045,0.003136148,0.0005939418,0.007073789,0.7501741,0.004121032,0.01000086,0.00008500901],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9643632,0.001775923,0.03104383,0.00008848792,0.00002620684,0.00002202254,0.0008109955,0.0002590386,0.001610239],"genre_scores_gemma":[0.9764609,0.0005127811,0.02100955,0.00004832439,0.0000100439,0.00002580373,0.001177241,0.00005480055,0.0007004724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006500949,"threshold_uncertainty_score":0.002174854,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02490643138938635,"score_gpt":0.3184002512515953,"score_spread":0.2934938198622089,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}