{"id":"W2122078479","doi":"10.1093/gbe/evu218","title":"The Mitochondrial Genomes of the Glaucophytes Gloeochaete wittrockiana and Cyanoptyche gloeocystis: Multilocus Phylogenetics Suggests a Monophyletic Archaeplastida","year":2014,"lang":"en","type":"letter","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick","funders":"Natural Sciences and Engineering Research Council of Canada; New Brunswick Innovation Foundation","keywords":"Biology; Monophyly; Genome; Phylogenetic tree; Genetics; Mitochondrial DNA; Nuclear gene; ORFS; Evolutionary biology; Gene; Clade; Open reading frame","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000610829,0.0002240008,0.0001643332,0.000391587,0.0002266355,0.0002546109,0.0001570532,0.0001751679,0.0008838683],"category_scores_gemma":[0.0002254916,0.0001101671,0.0001796771,0.0004439295,0.0001278154,0.0002207589,0.0002572204,0.0002405438,0.0003333284],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002398606,"about_ca_system_score_gemma":0.0002784421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002063071,"about_ca_topic_score_gemma":0.004782931,"domain_scores_codex":[0.9999305,0.0000050391,0.000006430801,0.00002935853,0.00001640256,0.00001221127],"domain_scores_gemma":[0.9998401,0.00002754891,0.00005531,0.00001935249,0.00002339165,0.000034319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001646733,0.0000189611,0.01774436,0.0001076686,0.00001938367,0.0001078603,0.0002684287,0.0001897652,0.9727393,0.00009143007,0.00003000755,0.008518177],"study_design_scores_gemma":[0.00002328479,0.0002091999,0.8876703,0.0000475588,0.00009297045,0.001251475,0.0005464226,0.001947746,0.1010089,0.0001808119,0.006997539,0.0000236669],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974643,0.0003124058,0.0007705071,0.00001724334,0.000001484169,0.000007093463,0.001079727,0.00002496849,0.0003223762],"genre_scores_gemma":[0.9882417,0.0003838211,0.002890167,0.00002472544,0.000002385557,0.00001763337,0.007402943,0.00001892826,0.001017742],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002063071,"threshold_uncertainty_score":0.00410217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006010293097181674,"score_gpt":0.2017342567014476,"score_spread":0.1957239636042659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}