{"id":"W2122170012","doi":"10.1111/j.1574-6968.2008.01094.x","title":"The prpZ gene cluster encoding eukaryotic-type Ser/Thr protein kinases and phosphatases is repressed by oxidative stress and involved in Salmonella enterica serovar Typhi survival in human macrophages","year":2008,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université de Montréal","funders":"","keywords":"Salmonella enterica; Kinase; Phosphatase; Microbiology; Serotype; Gene; Biology; Oxidative stress; Salmonella; Bacteria; Cell biology; Genetics; Biochemistry; Phosphorylation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003628995,0.0002861872,0.0004294649,0.00002948311,0.0003479695,0.00003593957,0.0002882871,0.0001883752,0.00003342922],"category_scores_gemma":[0.00008098195,0.0001290935,0.00004489027,0.0002249662,0.0006452244,0.00009417772,0.0002252095,0.0002615844,0.000005403949],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003397559,"about_ca_system_score_gemma":0.000006438109,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001590214,"about_ca_topic_score_gemma":0.001000315,"domain_scores_codex":[0.9976972,0.0006298366,0.0004263387,0.0006563154,0.00005141308,0.0005388493],"domain_scores_gemma":[0.9990349,0.0005601979,0.0001805144,0.0001245633,0.00002895258,0.00007088056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001053584,0.0000417499,0.336742,0.00000613481,0.00001731953,0.00003459682,0.0002098424,0.000002128642,0.6612428,0.000003023194,0.001380501,0.0002145615],"study_design_scores_gemma":[0.0008756683,0.0003738658,0.6798908,0.00008148313,0.00001159775,0.00006689106,0.0005069138,0.00001342978,0.3157123,0.00005618458,0.001958164,0.0004527383],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930481,0.002421854,0.000001345176,0.003703551,0.000121994,0.0004713195,0.0001916281,0.00002784422,0.00001234682],"genre_scores_gemma":[0.9964619,0.0008579697,0.00005010031,0.00210864,0.0000717065,0.00003362253,0.0003353987,0.00000383555,0.00007681025],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3455305,"threshold_uncertainty_score":0.5264281,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02129225480396606,"score_gpt":0.2267994157898298,"score_spread":0.2055071609858637,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}