{"id":"W2122278737","doi":"10.1186/1471-2164-14-427","title":"Variant surface antigens of malaria parasites: functional and evolutionary insights from comparative gene family classification and analysis","year":2013,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Malaria Research and Control","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"SFU Community Trust Endowment Fund; Natural Sciences and Engineering Research Council of Canada; Simon Fraser University; Western Canada Research Grid; Compute Canada","keywords":"Biology; Genetics; Gene; Subtelomere; Gene family; Virulence; Plasmodium falciparum; In silico; Antigenic variation; Conserved sequence; Plasmodium (life cycle); Genome; Computational biology; Malaria; Peptide sequence; Parasite hosting","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002636781,0.0001683712,0.0001756695,0.001533069,0.0003071024,0.0002678999,0.0002435461,0.0001819244,0.001082252],"category_scores_gemma":[0.0003806349,0.00006076783,0.0002241529,0.00124844,0.000286049,0.0002814466,0.0002352554,0.0002668814,0.0003320318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002989182,"about_ca_system_score_gemma":0.0002110621,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001197185,"about_ca_topic_score_gemma":0.0007863618,"domain_scores_codex":[0.9998682,0.00001970771,0.000008646845,0.00004753144,0.00002760844,0.00002822724],"domain_scores_gemma":[0.9998369,0.0000414011,0.00004169307,0.00001345237,0.00003007722,0.00003639081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001163675,0.00009810069,0.0656903,0.0002973388,0.00007659904,0.0005240728,0.0006864677,0.0009050366,0.8276545,0.00229413,0.0005483959,0.1000615],"study_design_scores_gemma":[0.00006525933,0.0006926653,0.8762397,0.00009302257,0.0002262753,0.004847186,0.0008520351,0.01868172,0.06703866,0.004281919,0.02693026,0.00005125059],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9894332,0.001383339,0.006427757,0.00006264007,0.000008666701,0.00002157573,0.0011638,0.00004394914,0.001455067],"genre_scores_gemma":[0.9797215,0.001015237,0.01432819,0.00003578919,0.00002525961,0.00004299583,0.004185011,0.00003115649,0.0006149195],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001533069,"threshold_uncertainty_score":0.003620446,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05135925057498347,"score_gpt":0.2706484102163068,"score_spread":0.2192891596413233,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}