{"id":"W2122699308","doi":"10.1101/gr.078519.108","title":"Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding","year":2008,"lang":"en","type":"article","venue":"Genome Research","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":190,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"Genome British Columbia; Michael Smith Health Research BC; Genome Canada","keywords":"H3K4me3; FOXA2; Biology; Molecular biology; Binding site; Transcription factor; HeLa; STAT1; Transcription (linguistics); Histone; Promoter; Gene expression; Cell culture; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009030009,0.0001388018,0.0001663203,0.0002949704,0.0004920334,0.0000411166,0.00009821676,0.0002166216,0.00001656861],"category_scores_gemma":[0.0003227429,0.0001448828,0.00004388232,0.0002784271,0.0002005835,0.00001477541,0.00007561347,0.0002430087,0.00001309024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006095488,"about_ca_system_score_gemma":0.00007305676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003694103,"about_ca_topic_score_gemma":0.00001248959,"domain_scores_codex":[0.9983706,0.0002654374,0.0002760464,0.0004369745,0.0003123378,0.0003386302],"domain_scores_gemma":[0.9991917,0.0001636174,0.00006178535,0.0002500786,0.0001627925,0.000169998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003371342,0.00001499099,0.2319402,0.00002311844,0.00002161195,0.000001665565,0.0003320813,0.00001587604,0.7660571,0.0000151962,0.000006078352,0.001538376],"study_design_scores_gemma":[0.0005067904,0.0002609151,0.9402539,0.000004442285,0.00001256461,0.000003175086,0.00005056365,0.00002193324,0.05079867,0.0003461694,0.0075732,0.0001677514],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861053,0.009046425,0.003875195,0.0002395126,0.00002926174,0.0003314227,0.00003878372,0.00001197314,0.0003221235],"genre_scores_gemma":[0.9939816,0.003312234,0.0007346861,0.000006825832,0.0002245937,0.00001985111,0.0004040644,0.00002795938,0.001288194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7152584,"threshold_uncertainty_score":0.5908151,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1377484505866038,"score_gpt":0.3685764548903476,"score_spread":0.2308280043037438,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}