{"id":"W2122699308","doi":"10.1101/gr.078519.108","title":"Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding","year":2008,"lang":"en","type":"article","venue":"Genome Research","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":190,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"Genome British Columbia; Michael Smith Health Research BC; Genome Canada","keywords":"H3K4me3; FOXA2; Biology; Molecular biology; Binding site; Transcription factor; HeLa; STAT1; Transcription (linguistics); Histone; Promoter; Gene expression; Cell culture; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002956742,0.0001417847,0.0003216778,0.0005789709,0.0002114027,0.0003529125,0.0001816585,0.0002829492,0.0028502],"category_scores_gemma":[0.0004000451,0.000195174,0.0003560946,0.0006930878,0.0001796576,0.0001162862,0.0002471989,0.0003657939,0.0004088717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001994935,"about_ca_system_score_gemma":0.0001174371,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002990492,"about_ca_topic_score_gemma":0.007646883,"domain_scores_codex":[0.9996787,0.00002891517,0.00001282063,0.0001838091,0.00003826333,0.00005745151],"domain_scores_gemma":[0.9996586,0.0001409919,0.00008073499,0.0000345955,0.00003000878,0.00005510581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001089597,0.00004854624,0.4251459,0.0001451866,0.0008486336,0.0001597168,0.0002589939,0.0005331652,0.5620283,0.0001744128,0.0005939672,0.008973706],"study_design_scores_gemma":[0.000005341185,0.00002666078,0.9927559,0.000002259668,0.00005904561,0.0001552451,0.0000426589,0.0003497279,0.005870843,0.00003502395,0.0006914797,0.000005762737],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932412,0.0008838808,0.0009961167,0.00004534393,0.000006269513,0.000005087681,0.003915082,0.00004385995,0.0008632214],"genre_scores_gemma":[0.9942502,0.0001893504,0.000788823,0.00007432285,0.000006389253,0.00001899368,0.003735397,0.00002177015,0.0009147745],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002990492,"threshold_uncertainty_score":0.009534895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1377484505866038,"score_gpt":0.3685764548903476,"score_spread":0.2308280043037438,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}