{"id":"W2122773612","doi":"10.1128/aem.71.7.4057-4068.2005","title":"Genomic Organization and Molecular Analysis of Virulent Bacteriophage 2972 Infecting an Exopolysaccharide-Producing <i>Streptococcus thermophilus</i> Strain","year":2005,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptococcus thermophilus; Biology; ORFS; Genome; Genetics; Bacteriophage; Gene; Virulence; Intron; Open reading frame; Peptide sequence; Escherichia coli; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001073479,0.0001972026,0.0002705256,0.00007871877,0.0001337177,0.00002430459,0.0001040881,0.00010272,0.00180617],"category_scores_gemma":[0.000002773037,0.0001948049,0.00004560561,0.000165761,0.0002718093,0.0001405428,0.0002522308,0.0001130828,0.0000342875],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009617415,"about_ca_system_score_gemma":0.00000301058,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009693904,"about_ca_topic_score_gemma":0.00006542755,"domain_scores_codex":[0.9989086,0.00003455037,0.0002925504,0.0005021739,0.00003208202,0.0002300833],"domain_scores_gemma":[0.9995216,0.00001936341,0.0001527097,0.0002244371,0.000001591497,0.00008031682],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000007598223,0.00009482581,0.01079347,0.000003565816,0.0001148589,0.000001213,0.0006446089,0.0003629313,0.9787683,0.00001961865,0.000003887007,0.009185073],"study_design_scores_gemma":[0.0003710702,0.00007845223,0.4114344,0.000003505975,0.0003269577,0.00004858472,0.0002937652,0.000127913,0.5862622,0.0000124501,0.0007467974,0.0002939284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991369,0.00006205628,0.0001731206,0.00004403936,0.00002930296,0.0002142345,0.0001531341,0.00002015209,0.0001670082],"genre_scores_gemma":[0.998575,0.0001075794,0.0005662594,0.0003268942,0.00002729922,0.000008199249,0.0003452392,0.00002236878,0.00002110967],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4006409,"threshold_uncertainty_score":0.9991063,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003590461226442675,"score_gpt":0.1886178473640751,"score_spread":0.1850273861376324,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}