{"id":"W2122792073","doi":"10.1186/gb-2013-14-10-r114","title":"AVISPA: a web tool for the prediction and analysis of alternative splicing","year":2013,"lang":"en","type":"article","venue":"Genome biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto; Genome Canada","keywords":"Exon; RNA splicing; In silico; Alternative splicing; Computational biology; splice; Biology; Gene; Genetics; Computer science; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00166264,0.002482767,0.001658206,0.004443711,0.0009307217,0.001820949,0.002785549,0.001698557,0.01801644],"category_scores_gemma":[0.005325154,0.00131611,0.002535761,0.003295484,0.0005535102,0.001775065,0.002818891,0.002071542,0.0149627],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006473964,"about_ca_system_score_gemma":0.001280211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004234649,"about_ca_topic_score_gemma":0.005400562,"domain_scores_codex":[0.9990425,0.0001737235,0.0001062402,0.0002576965,0.0003352698,0.00008464413],"domain_scores_gemma":[0.9976944,0.001327327,0.0002683152,0.0003302859,0.0002582883,0.0001212603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002994498,0.0003373152,0.02338984,0.004929457,0.001829394,0.002524758,0.0009579515,0.01906761,0.1012002,0.01038424,0.5391691,0.2932156],"study_design_scores_gemma":[0.0009681688,0.000456719,0.03374018,0.0008101505,0.0006349935,0.005049659,0.0003842267,0.3206588,0.0904091,0.04929815,0.4970305,0.0005593275],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.019384,0.001777346,0.3486083,0.0003082066,0.0001810991,0.0002318368,0.112196,0.5123124,0.005000835],"genre_scores_gemma":[0.1010978,0.001588142,0.4966611,0.0006239148,0.0001239927,0.001403793,0.3560236,0.0364424,0.006035263],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.01801644,"threshold_uncertainty_score":0.06027097,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01245555396794035,"score_gpt":0.2740796122257764,"score_spread":0.2616240582578361,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}