{"id":"W2122864761","doi":"10.1186/1471-2164-13-287","title":"Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of Illinois at Urbana-Champaign; National Science Foundation","keywords":"Biology; Transcriptome; UniProt; Pyrosequencing; Annelid; De novo transcriptome assembly; Genetics; Regeneration (biology); Gene; Computational biology; Expressed sequence tag; KEGG; Evolutionary biology; Genome; Gene expression; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002438751,0.0003741405,0.0003508673,0.0005138715,0.0004261024,0.0004496092,0.0002420793,0.0003297793,0.0003551123],"category_scores_gemma":[0.0003471856,0.0002099097,0.0003847228,0.0004595516,0.0002571025,0.000274288,0.0003977072,0.0005957939,0.0004074605],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002429644,"about_ca_system_score_gemma":0.0003323149,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008446777,"about_ca_topic_score_gemma":0.001696192,"domain_scores_codex":[0.9997805,0.00001610252,0.00001366138,0.00008155768,0.00008708238,0.00002109503],"domain_scores_gemma":[0.9998017,0.00006104086,0.00004485547,0.00002203672,0.00004636778,0.00002405549],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004755241,0.000008015565,0.001808884,0.00004555042,0.000007118498,0.00004150685,0.00007940846,0.000165854,0.9957823,0.00003069444,0.00002409466,0.001959078],"study_design_scores_gemma":[0.00004030361,0.000828338,0.3599547,0.00006520371,0.0001901923,0.00123055,0.000763551,0.01510074,0.6067804,0.0005609198,0.01441273,0.0000724656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9771841,0.0006987119,0.0153885,0.00006633525,0.00001678293,0.00008683332,0.004813851,0.0001233881,0.001621662],"genre_scores_gemma":[0.9257853,0.0009951447,0.04563143,0.0001684325,0.00002315759,0.0004288561,0.02365604,0.0001591503,0.003152461],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008446777,"threshold_uncertainty_score":0.001762807,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03274927964803145,"score_gpt":0.2544700883772649,"score_spread":0.2217208087292335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}