{"id":"W2122864761","doi":"10.1186/1471-2164-13-287","title":"Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"University of Illinois at Urbana-Champaign; National Science Foundation","keywords":"Biology; Transcriptome; UniProt; Pyrosequencing; Annelid; De novo transcriptome assembly; Genetics; Regeneration (biology); Gene; Computational biology; Expressed sequence tag; KEGG; Evolutionary biology; Genome; Gene expression; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003521743,0.00007705117,0.00008280665,0.00001994458,0.0001527807,0.000004343733,0.0001174158,0.00009912654,5.092411e-7],"category_scores_gemma":[0.00003287035,0.0000562414,0.00005485317,0.00005275043,0.00003892112,0.00001373595,0.00001736966,0.00003943399,1.167767e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004152959,"about_ca_system_score_gemma":0.00007759494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001787054,"about_ca_topic_score_gemma":0.00007935881,"domain_scores_codex":[0.9994128,0.00006861358,0.0002104583,0.0001177318,0.00004670327,0.0001436723],"domain_scores_gemma":[0.9995193,0.000009039138,0.0001822831,0.0001933916,0.0000780408,0.00001787558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008716029,0.00002807432,0.01577441,0.0000146842,0.00001261507,2.807379e-9,0.0004832877,0.0273202,0.9557109,0.0003511914,0.00001345397,0.0002040276],"study_design_scores_gemma":[0.0002921091,0.0001048863,0.03554803,0.000006395519,0.00004903503,0.00000323192,0.00009892643,0.3048059,0.6586365,0.0002042549,0.0001503823,0.0001003802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5987125,0.0001074114,0.4008051,0.00005599293,0.00008497811,0.0002042498,0.00002347515,0.000002408239,0.000003925833],"genre_scores_gemma":[0.9983107,0.00001503831,0.0009509395,0.00005676211,0.0001989769,0.00001653371,0.0004062541,0.00001039374,0.00003443101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3998541,"threshold_uncertainty_score":0.2293458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03274927964803145,"score_gpt":0.2544700883772649,"score_spread":0.2217208087292335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}