{"id":"W2122898583","doi":"10.1093/bioinformatics/btu681","title":"mimicMe: a web server for prediction and analysis of host-like proteins in microbial pathogens","year":2014,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Host (biology); Proteome; Pathogen; Biology; Web server; Function (biology); Computational biology; Microbiology; Bioinformatics; Computer science; World Wide Web; Genetics; The Internet","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000891706,0.001770232,0.001228618,0.001403661,0.0008507181,0.001521996,0.001692286,0.001129289,0.01995028],"category_scores_gemma":[0.002613516,0.0009311758,0.001376826,0.001287468,0.0002726686,0.001612057,0.001465965,0.001025223,0.01621044],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006880088,"about_ca_system_score_gemma":0.001524173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001543097,"about_ca_topic_score_gemma":0.002398657,"domain_scores_codex":[0.9995372,0.0000920922,0.00004191936,0.0001226121,0.000151633,0.00005442002],"domain_scores_gemma":[0.9993318,0.0002009758,0.00008256056,0.00009223393,0.0001511018,0.0001413947],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.007016321,0.0004404752,0.01555763,0.003949852,0.0008181742,0.001175158,0.0003734372,0.01181423,0.1926955,0.006376491,0.6124691,0.1473137],"study_design_scores_gemma":[0.001428119,0.0009595737,0.03178566,0.0004350468,0.0006017504,0.003180267,0.0002793592,0.2630229,0.1587469,0.01683746,0.5222327,0.0004903188],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.1036455,0.004003482,0.2405742,0.0009107787,0.000690254,0.0007117953,0.2426334,0.3911748,0.01565581],"genre_scores_gemma":[0.1804422,0.001954508,0.2939614,0.0005821364,0.0002560994,0.001332155,0.4856252,0.01848222,0.01736393],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.01995028,"threshold_uncertainty_score":0.06674027,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00748936859276984,"score_gpt":0.2099967285767704,"score_spread":0.2025073599840006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}