{"id":"W2122898583","doi":"10.1093/bioinformatics/btu681","title":"mimicMe: a web server for prediction and analysis of host-like proteins in microbial pathogens","year":2014,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Host (biology); Proteome; Pathogen; Biology; Web server; Function (biology); Computational biology; Microbiology; Bioinformatics; Computer science; World Wide Web; Genetics; The Internet","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001491221,0.00007373933,0.0001460431,0.00009644982,0.00004115241,0.00001903804,0.00006382941,0.00005532277,0.0001243362],"category_scores_gemma":[0.00001930097,0.00006682808,0.00006956385,0.0002607664,0.00005277142,0.000218203,0.00005867815,0.00004293582,0.0000104934],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004344544,"about_ca_system_score_gemma":0.000005646409,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009487816,"about_ca_topic_score_gemma":0.0008422962,"domain_scores_codex":[0.9994417,0.00001153432,0.0002874134,0.00008160801,0.00005427597,0.0001233963],"domain_scores_gemma":[0.9996949,0.0000219535,0.0001114701,0.0001283576,0.000008859751,0.00003444165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005885155,0.0001592382,0.03306899,0.0001348668,0.0001455471,2.417364e-7,0.002572296,0.0007612664,0.9507403,0.0000419049,0.001338076,0.01097842],"study_design_scores_gemma":[0.0009607532,0.0002261655,0.6279532,0.00004157266,0.000366797,0.000006897885,0.0002288994,0.3334271,0.009612818,0.00001261066,0.02694356,0.0002196585],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954206,0.000002916429,0.003325592,0.00004767562,0.00007801689,0.0003253598,0.0003922822,0.0000112251,0.0003963004],"genre_scores_gemma":[0.9877141,0.00001525164,0.01186081,0.000129758,0.00001237361,0.00002076141,0.00009009949,0.00000566578,0.0001512012],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9411275,"threshold_uncertainty_score":0.272517,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00748936859276984,"score_gpt":0.2099967285767704,"score_spread":0.2025073599840006,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}