{"id":"W2123128942","doi":"10.1093/bioinformatics/btr184","title":"Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data","year":2011,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Genome; Computational biology; LNCaP; Biology; RNA-Seq; Gene; Genetics; Gene expression; Prostate cancer; Cancer; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004567686,0.002236026,0.001292492,0.002238531,0.0007714785,0.003164486,0.003628044,0.001534575,0.008647256],"category_scores_gemma":[0.007931181,0.001008981,0.001609641,0.002042555,0.001323934,0.002076556,0.001563332,0.002075956,0.005407715],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001190771,"about_ca_system_score_gemma":0.001544842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002064039,"about_ca_topic_score_gemma":0.004157247,"domain_scores_codex":[0.9971932,0.0004672726,0.0002104376,0.0009664877,0.0009725776,0.0001900482],"domain_scores_gemma":[0.9962704,0.001789978,0.0005140089,0.0008008651,0.0004619698,0.0001626854],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003298308,0.0005339732,0.01872725,0.003580435,0.001209409,0.001182617,0.0005833423,0.1052001,0.3429735,0.03165004,0.07110454,0.4199564],"study_design_scores_gemma":[0.0001832841,0.000283682,0.004586594,0.0001372417,0.0001115806,0.0006313683,0.0001356535,0.6696796,0.2784568,0.01533766,0.03024229,0.00021426],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.009708745,0.0001712157,0.9120288,0.0001645776,0.0000699388,0.000150642,0.005279658,0.07117787,0.001248453],"genre_scores_gemma":[0.07399499,0.0001684059,0.9075096,0.0003601428,0.00004547526,0.0004559868,0.01075547,0.004993063,0.001716896],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.008647256,"threshold_uncertainty_score":0.02892798,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03551003974175679,"score_gpt":0.2413429233919114,"score_spread":0.2058328836501546,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}