{"id":"W2123135264","doi":"10.1261/rna.7330504","title":"Origin, evolution, and mechanism of 5′ tRNA editing in chytridiomycete fungi","year":2004,"lang":"en","type":"article","venue":"RNA","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Dalhousie University; Université de Montréal","funders":"Canadian Institutes of Health Research; Université de Montréal; Canadian Institute for Advanced Research","keywords":"Biology; RNA editing; Transfer RNA; Genetics; Exonuclease; Nucleotide; Lineage (genetic); Mitochondrial DNA; RNA; DNA; Gene; Polymerase","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008465289,0.00005172046,0.00006895299,0.00002914514,0.00002841903,0.00000327406,0.00006284357,0.00006655251,0.000004745359],"category_scores_gemma":[0.00002055742,0.00005581289,0.00002324691,0.00005501923,0.00002744428,0.00000249784,0.0000494291,0.00003959642,0.000002721514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001371447,"about_ca_system_score_gemma":0.00003527151,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008385153,"about_ca_topic_score_gemma":0.00003137541,"domain_scores_codex":[0.9996371,0.00001104842,0.00008007751,0.0001215323,0.00004899429,0.0001012974],"domain_scores_gemma":[0.9998206,0.000002146021,0.00003640663,0.00008706654,0.00002492138,0.00002881257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003328916,0.00003027027,0.0122081,0.00003133129,0.00001812204,0.000006612008,0.00006909758,0.00004788904,0.9737394,0.0129902,0.00008576804,0.0007399304],"study_design_scores_gemma":[0.001024783,0.0001774381,0.0255667,0.00003799057,0.00001141157,0.00001684544,0.00007098301,0.00001350784,0.9613723,0.01049907,0.001072326,0.0001366624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952475,0.0009642186,0.002860809,0.00005216789,0.00008900255,0.00007271587,0.00001672236,0.000003423128,0.000693449],"genre_scores_gemma":[0.999168,0.0001016948,0.000513413,0.00003901831,0.0001151692,0.000001879859,0.00001074776,0.000003606731,0.00004647187],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0133586,"threshold_uncertainty_score":0.2275984,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008004136823966519,"score_gpt":0.2131619618417787,"score_spread":0.2051578250178122,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}