{"id":"W2123317029","doi":"10.1093/bioinformatics/bti035","title":"tPatternHunter: gapped, fast and sensitive translated homology search","year":2004,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University; University of Waterloo; Bioinformatics Solutions (Canada)","funders":"Killam Trusts; Canada Research Chairs","keywords":"Software; Computer science; Homology (biology); Frame (networking); Translation (biology); Information retrieval; Theoretical computer science; Artificial intelligence; Programming language; Biology; Genetics; Amino acid; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003222188,0.002937828,0.002454229,0.002386226,0.001418681,0.002219592,0.004269639,0.001995853,0.03141484],"category_scores_gemma":[0.009740601,0.001623054,0.001614635,0.003077566,0.0009799382,0.002367399,0.00177853,0.003846273,0.03839374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007260176,"about_ca_system_score_gemma":0.001666494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006805061,"about_ca_topic_score_gemma":0.001278842,"domain_scores_codex":[0.9977203,0.0006039754,0.0002295096,0.0007407271,0.0005082792,0.0001972498],"domain_scores_gemma":[0.997794,0.0009905379,0.0003084947,0.0003719365,0.0002971833,0.000237807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00615013,0.0004985485,0.002696272,0.005644128,0.0004646558,0.001606416,0.0006884974,0.006426067,0.192807,0.008290763,0.2428298,0.5318978],"study_design_scores_gemma":[0.001658864,0.00170516,0.005529435,0.00115748,0.0005099359,0.006388824,0.0003663941,0.184426,0.3915893,0.01366271,0.392383,0.0006229095],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01861194,0.003035054,0.7651436,0.0007821497,0.001397935,0.001045943,0.01458026,0.1903612,0.005041815],"genre_scores_gemma":[0.05683423,0.001453982,0.867345,0.0003697258,0.000242074,0.001563315,0.04603792,0.01743074,0.008722942],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03141484,"threshold_uncertainty_score":0.1050931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01029322687539442,"score_gpt":0.2294815749467501,"score_spread":0.2191883480713557,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}