{"id":"W2123465501","doi":"10.1186/1753-6561-5-s7-o27","title":"Biomarkers and gene copy number variation for terpenoid traits associated with insect resistance in Sitka spruce: An integrated genomic, proteomic, and biochemical analysis of (+)-3-carene biosynthesis","year":2011,"lang":"en","type":"article","venue":"BMC Proceedings","topic":"Plant biochemistry and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Biology; Gene; Terpenoid; Gene family; Terpene; Secondary metabolism; Phenotype; genomic DNA; Botany; Gene expression; Genetics; Biosynthesis; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000383964,0.0002515476,0.0003796225,0.0001381022,0.00005877041,0.00002957731,0.0001593669,0.0003154611,0.000009587383],"category_scores_gemma":[0.0002738291,0.0002185937,0.00007053971,0.0004216823,0.0001543473,0.00001981717,0.00004629711,0.00006343388,1.463211e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003328913,"about_ca_system_score_gemma":0.00007150495,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005802565,"about_ca_topic_score_gemma":0.0002228125,"domain_scores_codex":[0.998671,0.00002596192,0.0003306623,0.0006091715,0.0001049633,0.0002582475],"domain_scores_gemma":[0.9993145,0.00003347867,0.0002587888,0.000110229,0.0001815245,0.000101518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001921226,0.0001267834,0.09050267,0.0000928739,0.0005098304,6.498436e-7,0.0002569296,2.067224e-7,0.9064556,0.0000147851,0.0000276523,0.00009074575],"study_design_scores_gemma":[0.0006231214,0.0001385048,0.2128069,0.00005815155,0.0003885169,0.000005144337,0.00009789454,0.000128044,0.7854536,0.00003110901,0.00001802727,0.0002510507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986349,0.0001204724,0.0002732289,0.00001448453,0.000006803923,0.0004221146,0.0003762086,0.00001637088,0.0001354229],"genre_scores_gemma":[0.9845404,0.00005069463,0.0149557,0.00002290627,0.00002210534,0.00006702912,0.0002854133,0.00002323357,0.00003253731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1223042,"threshold_uncertainty_score":0.8913993,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01827070628383081,"score_gpt":0.217787997101611,"score_spread":0.1995172908177801,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}