{"id":"W2123879569","doi":"10.1093/molbev/msv042","title":"Discovery of Novel Genes Derived from Transposable Elements Using Integrative Genomic Analysis","year":2015,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Exaptation; Biology; Transposable element; Genome; Gene; Computational biology; Transposition (logic); Genetics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004302551,0.0004178537,0.0005198573,0.001015608,0.0002116223,0.0005839563,0.0005044225,0.0005085708,0.0006795838],"category_scores_gemma":[0.000544143,0.0002118975,0.0007466392,0.000952985,0.000428276,0.0004225564,0.0005363669,0.0006679692,0.0004082528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002621826,"about_ca_system_score_gemma":0.000369873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000249603,"about_ca_topic_score_gemma":0.0005683727,"domain_scores_codex":[0.9997221,0.00002075269,0.00002562625,0.0001181542,0.00008356383,0.00002983956],"domain_scores_gemma":[0.9997019,0.0001025498,0.000090116,0.00003764473,0.00002936263,0.00003843435],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000120137,0.00004066359,0.003434762,0.0001942932,0.00004177329,0.0003692456,0.00006087851,0.0002638962,0.9800679,0.0005760702,0.00009537402,0.01473498],"study_design_scores_gemma":[0.0001278221,0.001041314,0.1090132,0.00009130576,0.0006497146,0.004840002,0.0003266182,0.01148129,0.8445516,0.002810438,0.02497101,0.0000957443],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9045554,0.00495901,0.08059528,0.0004616253,0.00007826601,0.0002969913,0.005127729,0.0007251591,0.003200385],"genre_scores_gemma":[0.8289131,0.005033788,0.1473983,0.0006654239,0.00006329831,0.0002130446,0.01480585,0.0001613017,0.002745957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001015608,"threshold_uncertainty_score":0.002275467,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02394343693121651,"score_gpt":0.2513402453113224,"score_spread":0.2273968083801059,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}