{"id":"W2123879569","doi":"10.1093/molbev/msv042","title":"Discovery of Novel Genes Derived from Transposable Elements Using Integrative Genomic Analysis","year":2015,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Exaptation; Biology; Transposable element; Genome; Gene; Computational biology; Transposition (logic); Genetics; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006475583,0.00007149656,0.0001378984,0.00001654141,0.00005806285,0.000008192524,0.00005809516,0.00007274425,0.00001335568],"category_scores_gemma":[0.00001192357,0.000030595,0.00006405242,0.0002139865,0.00006215506,0.00004178454,0.0000257729,0.00002858495,7.66313e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002142463,"about_ca_system_score_gemma":0.00001178773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001447586,"about_ca_topic_score_gemma":0.001178904,"domain_scores_codex":[0.9995037,0.00005504092,0.0001387086,0.0001674291,0.00003921543,0.00009595304],"domain_scores_gemma":[0.9998082,0.00002033495,0.0000634423,0.00003073075,0.00004515289,0.00003213849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001758311,0.0000366181,0.1452079,4.324162e-7,0.0001245807,2.06206e-7,0.00005568458,0.0001896767,0.8534967,0.0004697239,4.027225e-7,0.0004004861],"study_design_scores_gemma":[0.0005888309,0.0003078713,0.8270004,0.00001020436,0.0005803732,0.000002216015,0.0006215122,0.02143546,0.1411043,0.008046035,0.0000765587,0.000226322],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9730667,0.0008031419,0.02571898,0.00007606423,0.00003875782,0.00006370587,0.0002048247,0.000006035066,0.00002183048],"genre_scores_gemma":[0.9971628,0.00001695814,0.00245263,0.00002170847,0.00002846965,0.000002918401,0.000306493,3.580912e-7,0.000007684062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7123924,"threshold_uncertainty_score":0.2188327,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02394343693121651,"score_gpt":0.2513402453113224,"score_spread":0.2273968083801059,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}