{"id":"W2124483454","doi":"10.1111/tpj.12959","title":"Sequencing of 15 622 gene‐bearing <scp>BAC</scp>s clarifies the gene‐dense regions of the barley genome","year":2015,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"University of California, Riverside; Joint Genome Institute; Office of Science; U.S. Department of Agriculture; U.S. Department of Energy; Cooperative State Research, Education, and Extension Service; National Science Foundation","keywords":"Synteny; Genome; Biology; Genetics; Aegilops tauschii; Bacterial artificial chromosome; Hordeum vulgare; Gene; Comparative genomics; Gene prediction; Genomics; Reference genome; Genome project; Sequence assembly; Shotgun sequencing; Computational biology; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002875817,0.0006134628,0.0004851274,0.0008969359,0.0006969493,0.0006115043,0.0003079382,0.0004224682,0.008442425],"category_scores_gemma":[0.0006984294,0.0002688384,0.000506705,0.00178877,0.0002367506,0.0002915323,0.0004253847,0.0006916275,0.005081254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004078936,"about_ca_system_score_gemma":0.0008000432,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005401139,"about_ca_topic_score_gemma":0.009924942,"domain_scores_codex":[0.9998167,0.000008585064,0.00001977796,0.00007106149,0.0000545962,0.00002929132],"domain_scores_gemma":[0.9997398,0.00005716164,0.00004234222,0.00003912648,0.00006662484,0.00005494163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004205981,0.00004574446,0.003376123,0.0003974018,0.0000328998,0.001020532,0.0003258596,0.0003018927,0.9560571,0.0005573092,0.003697813,0.03376663],"study_design_scores_gemma":[0.0001942636,0.0003866431,0.1872731,0.0002388347,0.0002323793,0.003346613,0.0004398337,0.005338695,0.6114439,0.001330207,0.1896693,0.0001060844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7814614,0.002031918,0.06502061,0.0003290385,0.000240354,0.0003999012,0.1260258,0.006534748,0.01795615],"genre_scores_gemma":[0.487944,0.00178619,0.1406498,0.0005163827,0.00008387688,0.0004594345,0.3456477,0.004064889,0.01884778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008442425,"threshold_uncertainty_score":0.02824277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06405510068253592,"score_gpt":0.2108817336996919,"score_spread":0.146826633017156,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}