{"id":"W2124836116","doi":"10.1128/mbio.00909-14","title":"Preferential Packing of Acidic Glycosidases and Proteases into <i>Bacteroides</i> Outer Membrane Vesicles","year":2014,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":274,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"Canadian Institutes of Health Research; Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Alberta Glycomics Centre; University of Alberta","keywords":"Bacteroides thetaiotaomicron; Bacterial outer membrane; Bacteroides fragilis; Proteases; Bacteroides; Microbiology; Bacteria; Biogenesis; Biology; Proteome; Vesicle; Membrane protein; Bacteroidaceae; Biochemistry; Chemistry; Enzyme; Membrane; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008719477,0.0001106999,0.0002024731,0.00005596085,0.0001029275,0.00001880678,0.00006624928,0.0001134812,0.0003002241],"category_scores_gemma":[0.00004750585,0.00008909551,0.00004396707,0.0000452482,0.0001313144,0.00009789329,0.00005091212,0.00008162378,0.0000362932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004668891,"about_ca_system_score_gemma":0.0000094201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003365347,"about_ca_topic_score_gemma":0.00007992967,"domain_scores_codex":[0.9993943,0.0001013734,0.0001871201,0.0001645244,0.000009908751,0.0001427943],"domain_scores_gemma":[0.9996493,0.00005539567,0.00008440103,0.000155155,0.00004038376,0.00001531131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008621691,0.00005698839,0.005213368,0.00004864641,0.00005264597,9.965914e-8,0.0001553953,2.54792e-7,0.9849063,0.0002773073,0.0002235164,0.008979319],"study_design_scores_gemma":[0.0007411391,0.0002095412,0.01010676,0.00005133366,0.00003805032,0.00002159923,0.00004628153,0.000001181336,0.9702368,0.0002573633,0.01818485,0.0001050667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987137,0.000269764,0.0001005075,0.0001280135,0.0004009087,0.0001390633,0.00001300428,0.00004467729,0.0001903414],"genre_scores_gemma":[0.9995813,0.00003034908,0.00004334661,0.00003249246,0.00009023659,0.00001644252,0.00003717524,0.000009655692,0.000158974],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01796133,"threshold_uncertainty_score":0.3633209,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01063750365482602,"score_gpt":0.2230418853286689,"score_spread":0.2124043816738429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}