{"id":"W2124890939","doi":"10.1158/1078-0432.ccr-11-1431","title":"Integrative Genomics Identified <i>RFC3</i> As an Amplified Candidate Oncogene in Esophageal Adenocarcinoma","year":2012,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Esophageal Cancer Research and Treatment","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Occupational Cancer Research Centre","funders":"Canadian Institutes of Health Research; National Institutes of Health; Wellcome Trust; University of Michigan","keywords":"Biology; Carcinogenesis; Cancer; Gene duplication; Oncogene; Copy-number variation; Gene knockdown; Candidate gene; Malignancy; Cancer research; CDKN2A; Barrett's esophagus; Comparative genomic hybridization; Genomics; Adenocarcinoma; Gene; Genome; Genetics; Cell cycle","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002124891,0.000282809,0.0002890457,0.0005794215,0.0002427667,0.00024254,0.0002077791,0.0003126334,0.0009520217],"category_scores_gemma":[0.0002198366,0.0001098707,0.0004781325,0.000422467,0.0002349393,0.0001013734,0.0002080257,0.0003443579,0.0002118365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004796261,"about_ca_system_score_gemma":0.000344758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002490544,"about_ca_topic_score_gemma":0.003521306,"domain_scores_codex":[0.9998976,0.000006577413,0.000005418033,0.00003573563,0.00003177296,0.00002293331],"domain_scores_gemma":[0.9998668,0.00003495258,0.00004065397,0.00001272954,0.00002434113,0.00002051256],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002315753,0.00002949683,0.008899816,0.00005456981,0.00002078986,0.0002561428,0.00003815819,0.0003935526,0.985292,0.00007899092,0.00007354566,0.004631325],"study_design_scores_gemma":[0.00006395884,0.000672965,0.3726406,0.00002950442,0.0002613586,0.005527636,0.0001850629,0.01167432,0.603773,0.0003089907,0.004834006,0.00002862121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939121,0.0005138408,0.003938809,0.00008688545,0.000006321771,0.00004504352,0.0006763379,0.00008751689,0.000733123],"genre_scores_gemma":[0.9931824,0.0002383631,0.004623235,0.00009039853,0.00000497662,0.00002174513,0.001325898,0.00002581228,0.0004871845],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002490544,"threshold_uncertainty_score":0.004952073,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.209089250673476,"score_gpt":0.5412453445037941,"score_spread":0.3321560938303181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}