{"id":"W2124892349","doi":"10.7554/elife.03125","title":"Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics","year":2014,"lang":"en","type":"article","venue":"eLife","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":238,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Office of Science; Canada Foundation for Innovation; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Tula Foundation; Canadian Institute for Advanced Research; Gordon and Betty Moore Foundation; Ambrose Monell Foundation; National Science Foundation","keywords":"Biology; Genome; Host (biology); Bacteria; Virus; Metagenomics; Viral evolution; Biogeochemical cycle; Viral replication; Giant Virus; Ecology; Evolutionary biology; Genetics; Virology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001407096,0.00009295672,0.000179814,0.00001930323,0.00008525308,0.0000204091,0.00004474311,0.00005960551,0.0006124544],"category_scores_gemma":[0.00007362443,0.00008224985,0.00002931016,0.00005417389,0.0001075859,0.0001433768,0.0001062406,0.00006571723,0.00004841632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007717618,"about_ca_system_score_gemma":0.000004436132,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00100548,"about_ca_topic_score_gemma":0.0002781087,"domain_scores_codex":[0.9994121,0.00007006703,0.0001738219,0.000176594,0.00004196273,0.0001254138],"domain_scores_gemma":[0.9996573,0.00007685077,0.000112453,0.00008950059,0.000009655309,0.00005418882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001016311,0.0000478312,0.01691564,0.000006062454,0.00003231852,1.672694e-7,0.0001138083,0.000006615278,0.982088,0.00000809724,0.0005622793,0.0002090316],"study_design_scores_gemma":[0.0005616287,0.0003205341,0.3824036,0.000006053492,0.0003703726,0.00003154056,0.00008937783,0.00009453316,0.5690448,0.00004570421,0.04680458,0.0002272887],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987614,0.00005059622,0.0000865286,0.00007160345,0.0000743135,0.00009505844,0.00001707258,0.00001597147,0.0008274435],"genre_scores_gemma":[0.9987464,0.00002467885,0.0006159563,0.0002321137,0.0000154597,0.000004380922,0.000005846578,0.000009115804,0.0003460351],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4130432,"threshold_uncertainty_score":0.6705946,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01322178737071346,"score_gpt":0.2248575626618946,"score_spread":0.2116357752911812,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}