{"id":"W2124935821","doi":"10.1093/bioinformatics/bth413","title":"EC_oligos: automated and whole-genome primer design for exons within one or between two genomes","year":2004,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University; Ste. Anne's Hospital","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Executable; Oligonucleotide; Genome; Primer (cosmetics); Computational biology; Exon; Biology; File Transfer Protocol; Genetics; Computer science; Sequence (biology); DNA; Programming language; Gene; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001859352,0.002991651,0.001431201,0.001787578,0.0009179963,0.001430771,0.002544599,0.001248274,0.04856285],"category_scores_gemma":[0.003821903,0.002413268,0.001446852,0.00137265,0.000740113,0.001340452,0.001421201,0.002069111,0.03152866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001069488,"about_ca_system_score_gemma":0.002228137,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002669004,"about_ca_topic_score_gemma":0.00650626,"domain_scores_codex":[0.9988431,0.0001938778,0.0001458058,0.0003859556,0.0002861802,0.0001451106],"domain_scores_gemma":[0.9983992,0.0006678097,0.0001990103,0.0002904926,0.0003139908,0.0001294842],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002997013,0.000363578,0.003996267,0.003662525,0.0003423108,0.0006172061,0.0004729198,0.006074481,0.3588601,0.009203331,0.3302659,0.2831445],"study_design_scores_gemma":[0.0007498933,0.0005282175,0.00599705,0.0003042261,0.0002691036,0.001619386,0.0001188006,0.03325079,0.5626051,0.00647644,0.3877705,0.0003104274],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.02265698,0.001422595,0.7389458,0.0004640366,0.0004382649,0.001633417,0.09454129,0.1260541,0.01384336],"genre_scores_gemma":[0.02638534,0.0005315988,0.8227485,0.0005125748,0.00006491985,0.001986671,0.1217405,0.01462206,0.01140789],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.04856285,"threshold_uncertainty_score":0.162459,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04117622830420369,"score_gpt":0.272097196145129,"score_spread":0.2309209678409253,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}