{"id":"W2124965915","doi":"10.1093/bioinformatics/btu355","title":"GenomeVISTA—an integrated software package for whole-genome alignment and visualization","year":2014,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Perl; Computer science; Visualization; Software; Java; Genome; Web application; Source code; Flexibility (engineering); World Wide Web; Data mining; Operating system; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002296996,0.002674136,0.002038704,0.00337475,0.001125712,0.002469444,0.005079531,0.001510272,0.07136104],"category_scores_gemma":[0.006054778,0.001496643,0.001697714,0.003680486,0.0005829348,0.002823142,0.003007551,0.004274091,0.05441622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006927899,"about_ca_system_score_gemma":0.002497713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002736178,"about_ca_topic_score_gemma":0.002276507,"domain_scores_codex":[0.9988298,0.0002443233,0.0001239172,0.000285508,0.0004098811,0.000106627],"domain_scores_gemma":[0.9981095,0.0006621843,0.0002710124,0.0003176156,0.0004479991,0.0001917403],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008050401,0.00009211877,0.001192432,0.002264245,0.00040523,0.0003267561,0.0004280378,0.003144791,0.02471155,0.007596778,0.7768314,0.1822016],"study_design_scores_gemma":[0.0003992155,0.0001565623,0.003758128,0.0005079546,0.0001949117,0.0008747707,0.0001234796,0.03676499,0.02946804,0.02633756,0.9011213,0.0002931783],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002293911,0.000844172,0.3884386,0.0006150535,0.0006192653,0.0003340235,0.06897676,0.5298181,0.008060102],"genre_scores_gemma":[0.01600084,0.00121603,0.6305701,0.0007812564,0.0002655024,0.002625345,0.1869744,0.1514007,0.01016578],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.07136104,"threshold_uncertainty_score":0.2387264,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01184309034821305,"score_gpt":0.242854442158818,"score_spread":0.2310113518106049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}