{"id":"W2124965915","doi":"10.1093/bioinformatics/btu355","title":"GenomeVISTA—an integrated software package for whole-genome alignment and visualization","year":2014,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of General Medical Sciences","keywords":"Perl; Computer science; Visualization; Software; Java; Genome; Web application; Source code; Flexibility (engineering); World Wide Web; Data mining; Operating system; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001918146,0.0001483912,0.0001363531,0.00003364348,0.0001257296,0.00005431724,0.0001078269,0.00008773187,0.000002454282],"category_scores_gemma":[0.00007537226,0.000131538,0.00004019703,0.0000404059,0.00005201351,0.000002535456,0.00007939507,0.00002293038,0.00000499313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001148057,"about_ca_system_score_gemma":0.00002471493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000297872,"about_ca_topic_score_gemma":0.000008498083,"domain_scores_codex":[0.9993225,0.00001901439,0.000248883,0.0001506198,0.00006987327,0.0001891092],"domain_scores_gemma":[0.9994688,0.00001273077,0.00009843287,0.0002412483,0.00009530869,0.0000834743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001776964,0.0001943647,0.00484193,0.0006184281,0.0003398455,3.90789e-7,0.003257374,0.0003825258,0.8967525,0.003632083,0.003347165,0.08645565],"study_design_scores_gemma":[0.001186366,0.001430386,0.005571479,0.00001511606,0.00006036648,0.000008167295,0.0009016569,0.005889727,0.01630606,0.0003944113,0.967711,0.0005252188],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4628008,0.0004476333,0.5354492,0.00005606492,0.0001356867,0.0004953182,0.0003354292,0.00001500268,0.0002648995],"genre_scores_gemma":[0.9324967,0.0002998885,0.06364271,0.0007715016,0.0002400912,0.00006617199,0.00206266,0.00004145779,0.0003788741],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9643639,"threshold_uncertainty_score":0.5363965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01184309034821305,"score_gpt":0.242854442158818,"score_spread":0.2310113518106049,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}