{"id":"W2125214635","doi":"10.1186/1745-6150-2-36","title":"Evolutionary history of bacteriophages with double-stranded DNA genomes","year":2007,"lang":"en","type":"article","venue":"Biology Direct","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Biology; Genome; Phylogenetics; Phylogenetic tree; Horizontal gene transfer; Evolutionary biology; Reticulate evolution; Gene; Clade; DNA sequencing; Genetics; Genomics; Comparative genomics; Reticulate; Phylogenetic network; Molecular evolution","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005639569,0.0001898881,0.000202113,0.001027931,0.0005253051,0.0005162846,0.0002566715,0.0002854918,0.0005162474],"category_scores_gemma":[0.001400873,0.0001571519,0.0002210841,0.0007722648,0.0003817434,0.0004991936,0.0003468217,0.0003220832,0.0001210491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004910673,"about_ca_system_score_gemma":0.0002172965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000454025,"about_ca_topic_score_gemma":0.0004784361,"domain_scores_codex":[0.9997967,0.00005972523,0.00001388445,0.00006155827,0.00003832734,0.00002980121],"domain_scores_gemma":[0.999161,0.0004348441,0.0001636557,0.00005907498,0.0001031335,0.00007829978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000935835,0.0001262592,0.5430989,0.0004352622,0.0002276773,0.0003906073,0.001899676,0.009011996,0.3916127,0.00598174,0.0001480714,0.04613131],"study_design_scores_gemma":[0.00002348344,0.0005432067,0.9280534,0.00007462275,0.0001478548,0.001522244,0.0008087259,0.01572103,0.04073439,0.00572251,0.006602218,0.00004630459],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977533,0.0003456383,0.00141716,0.00001165252,9.346797e-7,0.000004635863,0.00009036394,0.000008475483,0.0003677393],"genre_scores_gemma":[0.9959875,0.0001761199,0.00319045,0.00001161381,0.000002360511,0.000008683275,0.0004495365,0.000007229061,0.0001665925],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001027931,"threshold_uncertainty_score":0.003562987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01236448286329804,"score_gpt":0.2274898086231744,"score_spread":0.2151253257598764,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}