{"id":"W2125296327","doi":"10.1186/1471-2164-8-23","title":"Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Retinoids in leukemia and cellular processes","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Alu element; Biology; Chromatin immunoprecipitation; Retinoic acid; Genetics; Consensus sequence; Chromatin; Macaque; Genome; Gene; Human genome; Computational biology; Gene expression; Peptide sequence; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008181176,0.0001916649,0.0001893762,0.00007741043,0.0001083901,0.00001302567,0.0002260918,0.0002197127,0.000009122705],"category_scores_gemma":[0.0003887592,0.0002029895,0.0001091083,0.00009672708,0.0001239821,0.000003527276,0.0001709438,0.00009853638,0.00001064912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001388807,"about_ca_system_score_gemma":0.000309949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009909183,"about_ca_topic_score_gemma":0.0000134551,"domain_scores_codex":[0.9983928,0.0001209617,0.0005367404,0.0004158943,0.000176855,0.0003567412],"domain_scores_gemma":[0.9988732,0.00004067556,0.0003065621,0.0005367505,0.000154664,0.00008816641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002514321,0.00003258054,0.01439793,0.0001111135,0.00002723095,0.000009230438,0.00009418334,0.0001871421,0.9823036,0.0000205986,0.0001040121,0.0001980841],"study_design_scores_gemma":[0.0009120089,0.0002104445,0.01060045,0.00003946384,0.00002835501,0.00004707915,0.0002495431,0.00007699883,0.9863735,0.00005131417,0.001193029,0.00021784],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923763,0.0008850748,0.005824736,0.00001286853,0.0001806218,0.0002438606,0.00001747001,0.00002136051,0.0004376636],"genre_scores_gemma":[0.9871773,0.0001314633,0.01193483,0.00002400002,0.0001329305,0.000007646757,0.00006611787,0.00003626261,0.0004894523],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006110089,"threshold_uncertainty_score":0.8277673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01084132989158651,"score_gpt":0.2554925019790643,"score_spread":0.2446511720874777,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}