{"id":"W2125354100","doi":"10.1371/journal.pone.0095467","title":"Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., Two New Alveolate Phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and Their Contributions to Reconstructing the Ancestral State of Alveolates and Eukaryotes","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":67,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Russian Foundation for Basic Research; Canadian Institute for Advanced Research; John Simon Guggenheim Memorial Foundation","keywords":"Biology; Phylum; Clade; Evolutionary biology; Phylogenetics; Genus; Zoology; Phylogenetic tree; Taxonomy (biology); Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003514994,0.0002275601,0.0003759985,0.0000578271,0.0002173218,0.00005082383,0.0001411339,0.0001213825,0.000005168402],"category_scores_gemma":[0.0001756612,0.000182517,0.0000483263,0.0001027446,0.0004104736,0.00002787712,0.0002449135,0.0001529919,9.304161e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001034688,"about_ca_system_score_gemma":0.00005780689,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002620752,"about_ca_topic_score_gemma":0.0002261138,"domain_scores_codex":[0.9988089,0.0001074001,0.0002961167,0.0003994933,0.0001059604,0.0002820895],"domain_scores_gemma":[0.9991179,0.0001025467,0.0002012859,0.0002358088,0.0001537551,0.0001887351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001753813,0.00008547684,0.1320145,0.0001291217,0.0002396237,6.41813e-7,0.0004528371,0.000006537407,0.8621646,0.00007258976,0.00002519803,0.004633517],"study_design_scores_gemma":[0.001837674,0.0008015238,0.2738339,0.0002315984,0.0002182066,0.00003778948,0.0002697049,0.001000771,0.7195136,0.001684678,0.0001649168,0.0004056354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953765,0.00282032,0.0003500085,0.0004430942,0.00002933192,0.0005089271,0.0003849618,0.000009512265,0.00007740515],"genre_scores_gemma":[0.9958624,0.001545378,0.002261694,0.0001079508,0.00009410231,0.000008713524,0.00004149695,0.0000152269,0.00006301898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.142651,"threshold_uncertainty_score":0.7442827,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02299925517239955,"score_gpt":0.2238967118285452,"score_spread":0.2008974566561456,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}