{"id":"W2125723329","doi":"10.1073/pnas.1421386112","title":"Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont <i>Hodgkinia</i>","year":2015,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Center for Research Resources; National Aeronautics and Space Administration; National Science Foundation","keywords":"Genome; Biology; Genome size; Lineage (genetic); Genome evolution; Evolutionary biology; Endosymbiosis; Most recent common ancestor; Bacterial genome size; Gene; Genetics; Plastid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001251475,0.0001179743,0.000177375,0.0002270434,0.000383837,0.0004031812,0.0002161944,0.0003843421,0.0004441826],"category_scores_gemma":[0.0002437403,0.0001755352,0.0001877111,0.0001890314,0.0002358923,0.0002429387,0.0004441271,0.0005176744,0.0001638995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005810038,"about_ca_system_score_gemma":0.0003129701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003801705,"about_ca_topic_score_gemma":0.005237845,"domain_scores_codex":[0.9999099,0.000005849397,0.000005147228,0.00003804143,0.00001769059,0.00002346075],"domain_scores_gemma":[0.9997968,0.00003296762,0.00006522076,0.00003622968,0.0000242763,0.00004447276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009681668,0.000008109949,0.007029438,0.00003431757,0.00001087391,0.0002460648,0.000168937,0.0001421987,0.9878821,0.0001519591,0.00005526906,0.004173997],"study_design_scores_gemma":[0.00003659696,0.0002591085,0.6299949,0.00003019849,0.00006278727,0.00220136,0.0007356898,0.002410607,0.3515387,0.0004633948,0.01223211,0.00003453917],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983084,0.0003925369,0.0005665972,0.00002528807,0.000002766585,0.000005722388,0.00008824973,0.00002292243,0.0005874396],"genre_scores_gemma":[0.9960575,0.0002750827,0.001997616,0.00009014028,0.000003226791,0.00001916112,0.0004638564,0.00002048664,0.001072891],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003801705,"threshold_uncertainty_score":0.007559121,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05572643227794399,"score_gpt":0.2668380008760273,"score_spread":0.2111115685980833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}