{"id":"W2125785650","doi":"10.1186/bcr1370","title":"Comprehensive copy number profiles of breast cancer cell model genomes","year":2006,"lang":"en","type":"article","venue":"Breast Cancer Research","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":100,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"Genome British Columbia; Genome Canada","keywords":"Surgical oncology; Breast cancer; Computational biology; Copy-number variation; Genome; Medicine; Cancer; Oncology; Bioinformatics; Biology; Internal medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001309327,0.0001565705,0.0001836099,0.00004052612,0.0001515534,0.00003147381,0.0002720329,0.0001208904,0.000839434],"category_scores_gemma":[0.000001243352,0.0001441935,0.00008574385,0.0001398896,0.0002077896,0.000009848866,0.000196403,0.0001269775,0.00001859623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001021568,"about_ca_system_score_gemma":0.0005575583,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0131266,"about_ca_topic_score_gemma":0.0006967966,"domain_scores_codex":[0.9985415,0.00008628993,0.0002452428,0.0003456505,0.0003330451,0.0004482824],"domain_scores_gemma":[0.9987607,0.00001274303,0.00007746481,0.0003171778,0.0007541493,0.00007775985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000524652,0.0003577858,0.1650625,0.0003681702,0.0001272385,0.000003908771,0.0001971003,0.01047963,0.79965,0.001223953,0.01992075,0.002084253],"study_design_scores_gemma":[0.003019382,0.0001603335,0.3431381,0.0001512151,0.00007311163,0.0002424284,0.001679806,0.003168163,0.6204016,0.001019241,0.02590905,0.001037576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9884433,0.002708257,0.00009046384,0.0004252663,0.00006543301,0.0002807656,0.002932317,0.00001005607,0.005044137],"genre_scores_gemma":[0.9924464,0.001179916,0.0003331638,0.00004526384,0.0004558008,0.0002108576,0.0001272528,0.00003242565,0.005168904],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1792485,"threshold_uncertainty_score":0.9934451,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02464903353915993,"score_gpt":0.3187580653616249,"score_spread":0.294109031822465,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}