{"id":"W2125960956","doi":"10.1128/aem.00128-11","title":"Bacteriophages LIMElight and LIMEzero of Pantoea agglomerans, Belonging to the “phiKMV-Like Viruses”","year":2011,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Vlaamse regering; Fonds Wetenschappelijk Onderzoek","keywords":"Biology; Pantoea agglomerans; Pantoea; Genome; Myoviridae; Context (archaeology); Lytic cycle; Bacteriophage; Bacterial virus; ORFS; Microbiology; Genetics; Open reading frame; Bacteria; Gene; Virus; Pseudomonas; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009318405,0.0002014231,0.000213645,0.00003307263,0.0001861408,0.00001346874,0.0001751806,0.00009205732,0.001693891],"category_scores_gemma":[0.000001463466,0.0001492758,0.00004127311,0.00006089042,0.0004768307,0.00007742313,0.0004270481,0.0001262716,0.0002715086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003602135,"about_ca_system_score_gemma":0.000002044672,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003738109,"about_ca_topic_score_gemma":0.0001185266,"domain_scores_codex":[0.99903,0.00003005975,0.000239036,0.0003775511,0.00003163963,0.0002916908],"domain_scores_gemma":[0.9995626,0.00003499734,0.00008306078,0.0002233215,8.322032e-7,0.00009518531],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004052167,0.00007038905,0.003489891,0.00000452421,0.00002743682,0.000001979088,0.001502778,0.000001664994,0.9874188,0.00003072078,0.0003296016,0.007081661],"study_design_scores_gemma":[0.0005281036,0.0002429777,0.4790338,0.0000167672,0.00007593822,0.0002118745,0.000734122,0.000003373249,0.4029444,0.00005289693,0.1157338,0.0004218844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978,0.0001851529,0.00005856399,0.0001356163,0.0001221023,0.0002713815,0.00009737616,0.00001529449,0.001314506],"genre_scores_gemma":[0.9972746,0.0003595677,0.0007475512,0.001299811,0.0000227635,0.00002400844,0.00002460569,0.000018699,0.0002283873],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5844744,"threshold_uncertainty_score":0.9992187,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008415771163633423,"score_gpt":0.1806277041305955,"score_spread":0.1722119329669621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}