{"id":"W2126038848","doi":"10.1002/nmi2.55","title":"Draft genome sequence of Coxiella burnetii Dog Utad, a strain isolated from a dog-related outbreak of Q fever","year":2014,"lang":"en","type":"article","venue":"New Microbes and New Infections","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Universidade de Trás-os-Montes e Alto Douro","keywords":"Coxiella burnetii; Q fever; Outbreak; Virology; Biology; Genotype; Whole genome sequencing; Strain (injury); Genome; Endocarditis; Typing; Genetics; Medicine; Gene; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001100711,0.0002829265,0.0005250652,0.0001992355,0.0001587834,0.00002183281,0.0001597087,0.0003912989,0.001835133],"category_scores_gemma":[0.00009123067,0.0002712374,0.0001858825,0.0003270501,0.0002892246,0.0001114814,0.0001029236,0.0003061829,0.0001507227],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003832452,"about_ca_system_score_gemma":0.0002201254,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01403227,"about_ca_topic_score_gemma":0.0006208146,"domain_scores_codex":[0.9984806,0.0001777647,0.0005653454,0.0004062251,0.00003729557,0.0003327575],"domain_scores_gemma":[0.9988838,0.0002241026,0.0003062955,0.0003658067,0.0001160089,0.0001039815],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000335346,0.0002653648,0.02044111,0.00002837941,0.0004468295,0.000001401653,0.0005754391,0.00009890431,0.9730088,0.0006055019,0.00306639,0.001428414],"study_design_scores_gemma":[0.02000207,0.004284326,0.4368331,0.0006603719,0.002680883,0.001062611,0.0004452588,0.0001481147,0.2253856,0.00772301,0.2983699,0.00240487],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992497,0.003383657,0.001297591,0.0001791946,0.0005481267,0.0002974225,0.0006346163,0.0001344359,0.001027921],"genre_scores_gemma":[0.9959196,0.0004495746,0.00008917999,0.0001354156,0.00006581599,0.000005690298,0.00026697,0.00003029085,0.003037472],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7476232,"threshold_uncertainty_score":0.999974,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01171254313854997,"score_gpt":0.2385367094331353,"score_spread":0.2268241662945853,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}