{"id":"W2126076884","doi":"10.1128/jb.01456-07","title":"Binding Site Determinants for the LysR-Type Transcriptional Regulator PcaQ in the Legume Endosymbiont <i>Sinorhizobium meliloti</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Sinorhizobium meliloti; Operon; Rhizobium leguminosarum; Transcriptional regulation; Rhizobiaceae; Bradyrhizobium japonicum; Agrobacterium tumefaciens; Genetics; lac operon; Binding site; Gene; Plasmid; Gene expression; Bacteria; Symbiosis; Transgene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001469619,0.0002467457,0.0002058503,0.0001997196,0.0001413722,0.0002388501,0.0001628039,0.0002053111,0.0009561527],"category_scores_gemma":[0.0002920701,0.000274745,0.0001778653,0.0001142223,0.0001974889,0.0001173375,0.0001949419,0.0002945985,0.0007183676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004488399,"about_ca_system_score_gemma":0.0001882673,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002445673,"about_ca_topic_score_gemma":0.003228776,"domain_scores_codex":[0.9998232,0.00003467079,0.000006951142,0.00003725207,0.00006438152,0.00003364655],"domain_scores_gemma":[0.99976,0.00006717128,0.00005921839,0.00001740499,0.00002373336,0.00007253063],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003836885,0.000009229237,0.0003160296,0.0000085457,0.000001528485,0.00001745745,0.000008448541,0.0000342052,0.9991724,0.0000294416,0.0000133474,0.0003510296],"study_design_scores_gemma":[0.00002677348,0.0001333118,0.02728916,0.000009430196,0.00001557437,0.0003176198,0.00005343553,0.001804374,0.9687034,0.00008135576,0.001552835,0.00001268234],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967012,0.0005286731,0.002079865,0.00005200786,0.000005638715,0.00000946516,0.0001383608,0.00004623907,0.0004386281],"genre_scores_gemma":[0.9967135,0.0001329985,0.001991961,0.00003734415,0.000003541715,0.00001005572,0.0004041635,0.00001823233,0.0006881931],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002445673,"threshold_uncertainty_score":0.004862905,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02385249189138584,"score_gpt":0.2475547235900712,"score_spread":0.2237022316986854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}