{"id":"W2126134203","doi":"10.1101/gr.3910705","title":"Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates","year":2005,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Biology; Transposable element; Genome; Retrotransposon; Genetics; Alu element; Human genome; Inverted repeat; Recombination; Repeated sequence; Genome evolution; Non-allelic homologous recombination; DNA; Ectopic recombination; Long terminal repeat; genomic DNA; Gene; Genetic recombination","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006677748,0.00007689263,0.000132396,0.00003710534,0.0001336875,0.00003232181,0.0001929209,0.00006585584,0.0006558059],"category_scores_gemma":[0.00004235873,0.00003781606,0.00002955044,0.0003942553,0.00009337482,0.00006335393,0.00008651277,0.0001255166,0.0000418329],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005913853,"about_ca_system_score_gemma":0.00001875948,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009025244,"about_ca_topic_score_gemma":0.0008076443,"domain_scores_codex":[0.9986052,0.0001097069,0.0003132374,0.0002472141,0.0003548535,0.0003698212],"domain_scores_gemma":[0.999588,0.0001525632,0.00001547121,0.00005363732,0.00007342544,0.0001168759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001945119,0.0001896317,0.04565712,0.000008870882,0.00001077355,0.000002593293,0.0001151911,0.000006702257,0.9453394,0.00004080385,0.00005254779,0.008556887],"study_design_scores_gemma":[0.0006755507,0.0004270843,0.9318045,0.0000327368,0.0000160926,0.00002549528,0.0002879132,0.001376603,0.02866162,0.0008496963,0.03557523,0.0002674311],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971346,0.0007614894,0.0000020385,0.0009642972,0.000009685216,0.0003256675,0.0001747666,0.000009716565,0.0006177906],"genre_scores_gemma":[0.9983952,0.0005882411,0.0004323708,0.00001371292,0.00005325658,0.00002905117,0.0001874551,0.000001164316,0.0002995396],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9166778,"threshold_uncertainty_score":0.7180614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04057995310600282,"score_gpt":0.3031499338307258,"score_spread":0.262569980724723,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}