{"id":"W2126134203","doi":"10.1101/gr.3910705","title":"Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates","year":2005,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Biology; Transposable element; Genome; Retrotransposon; Genetics; Alu element; Human genome; Inverted repeat; Recombination; Repeated sequence; Genome evolution; Non-allelic homologous recombination; DNA; Ectopic recombination; Long terminal repeat; genomic DNA; Gene; Genetic recombination","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000162891,0.0001678322,0.0001980603,0.0005917247,0.0002821255,0.0002343522,0.000155322,0.0002434537,0.0007256161],"category_scores_gemma":[0.0008119658,0.0001852323,0.0001083489,0.000368976,0.0004285037,0.0001813228,0.000299304,0.0002774939,0.0002067609],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000111559,"about_ca_system_score_gemma":0.0001016365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004785433,"about_ca_topic_score_gemma":0.0007069194,"domain_scores_codex":[0.9998154,0.00003953416,0.00001306921,0.00005578561,0.00005842631,0.00001774293],"domain_scores_gemma":[0.9997732,0.00006007601,0.00008404662,0.00004505801,0.00001436271,0.00002328135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000377921,0.00003587958,0.05734038,0.0001493378,0.00007570157,0.001695371,0.0009414877,0.0009357146,0.9032152,0.001406356,0.00008139318,0.0337452],"study_design_scores_gemma":[0.00005203677,0.0009551916,0.7198904,0.00008760041,0.000208392,0.02850518,0.0008261068,0.00236202,0.2258211,0.004260974,0.01699278,0.00003824581],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970024,0.0008362072,0.001367304,0.0000261911,0.00000334938,0.00000441915,0.00007226355,0.00002316428,0.0006647857],"genre_scores_gemma":[0.9976867,0.0005162139,0.001242158,0.00002577967,0.000007017851,0.000005875551,0.000209558,0.000007273197,0.0002993569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007256161,"threshold_uncertainty_score":0.002427459,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04057995310600282,"score_gpt":0.3031499338307258,"score_spread":0.262569980724723,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}