{"id":"W2126561976","doi":"10.1186/gb-2007-8-10-r207","title":"PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation","year":2007,"lang":"en","type":"article","venue":"Genome biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":104,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Genome Canada","keywords":"Biology; Annotation; Human genetics; Genome Biology; Computational biology; Sequence (biology); Genetics; Genomics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02795052,0.004903616,0.004699545,0.01368789,0.003220938,0.011125,0.01064311,0.004150895,0.03041865],"category_scores_gemma":[0.04276787,0.00578,0.003869913,0.01501441,0.002522882,0.01109872,0.01337098,0.008725371,0.08023323],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002184722,"about_ca_system_score_gemma":0.008267453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007969565,"about_ca_topic_score_gemma":0.006339613,"domain_scores_codex":[0.9880148,0.003199411,0.00256359,0.002818753,0.002677623,0.0007258446],"domain_scores_gemma":[0.9752377,0.008018972,0.002399809,0.009470372,0.003157981,0.001715189],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002399908,0.0003643082,0.002244117,0.007552969,0.0007451292,0.001651528,0.003166351,0.006845028,0.03630891,0.06480955,0.580099,0.2938132],"study_design_scores_gemma":[0.0004416466,0.0001483746,0.001901334,0.001171366,0.0001898866,0.000924901,0.0004772985,0.0131402,0.0138835,0.06296977,0.9043151,0.0004366618],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.0006490808,0.0006231375,0.7091411,0.0005469424,0.0003401568,0.001393616,0.05758902,0.2255118,0.004205067],"genre_scores_gemma":[0.005747868,0.001474571,0.7218125,0.0005883442,0.0001941101,0.004270614,0.2234478,0.037833,0.004631167],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03041865,"threshold_uncertainty_score":0.1478182,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00843230345218716,"score_gpt":0.2820041965576759,"score_spread":0.2735718931054887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}