{"id":"W2126757300","doi":"10.1093/bioinformatics/bts662","title":"Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass","year":2012,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Canadian Institutes of Health Research; University of Ottawa","keywords":"Lipidomics; Glycerophospholipids; Visualization; Identification (biology); Computer science; Glycerophospholipid; Computational biology; Degree of unsaturation; Phospholipid; Data visualization; Bioinformatics; Data science; Information retrieval; Chemistry; Data mining; Biology; Biochemistry; Chromatography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001288049,0.003044355,0.00115115,0.004623236,0.0006616678,0.002078918,0.00241742,0.001698946,0.04178623],"category_scores_gemma":[0.00452381,0.0007751033,0.001124817,0.002544702,0.000352986,0.003354288,0.003078277,0.0006896174,0.01869765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006788339,"about_ca_system_score_gemma":0.001085246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002497514,"about_ca_topic_score_gemma":0.003481151,"domain_scores_codex":[0.9994778,0.00007605786,0.00006172101,0.0001452792,0.0001666304,0.00007247987],"domain_scores_gemma":[0.9989449,0.0004549594,0.0001577156,0.0001487742,0.0001677024,0.0001259792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00325012,0.0003401719,0.01027208,0.00477267,0.0004566787,0.001313344,0.0005935521,0.00434391,0.03396926,0.01199678,0.6564876,0.2722039],"study_design_scores_gemma":[0.001841793,0.0009651342,0.01658397,0.001298931,0.000525008,0.003377364,0.0006259539,0.1991938,0.1168063,0.04582307,0.6122891,0.0006696146],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.02416247,0.003610018,0.1882942,0.001190731,0.0003418576,0.0007107598,0.1758813,0.5900282,0.01578035],"genre_scores_gemma":[0.1240684,0.00366468,0.4257587,0.001183244,0.0002692204,0.001648131,0.3903941,0.03236801,0.02064551],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.04178623,"threshold_uncertainty_score":0.1397889,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02067041235750669,"score_gpt":0.2879347834479615,"score_spread":0.2672643710904548,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}