{"id":"W2127066954","doi":"10.1002/pmic.200900627","title":"A ubiquitin and ubiquitin‐like protein spectral library","year":2009,"lang":"en","type":"article","venue":"PROTEOMICS","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research","keywords":"Ubiquitin; Computational biology; Proteomics; Chemistry; Cell biology; Biology; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006719525,0.000230773,0.0002057523,0.00004611083,0.0001584685,0.00009792184,0.0002690497,0.0001650614,0.0002646368],"category_scores_gemma":[0.00001805398,0.0002385091,0.00006445289,0.0001225812,0.00008005862,0.000279487,0.000104012,0.0003697205,0.00001824912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003547409,"about_ca_system_score_gemma":0.0000502504,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005369081,"about_ca_topic_score_gemma":7.180995e-7,"domain_scores_codex":[0.9987955,0.000009248586,0.0002881472,0.0004218193,0.0001166474,0.000368657],"domain_scores_gemma":[0.9992741,0.00001470322,0.000133459,0.0004106872,0.00002209151,0.0001449566],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006556526,0.0000952737,0.0002037914,0.00006779955,0.000007999924,0.000008888118,0.00008178811,0.000003031714,0.9274476,0.06299322,0.0003586697,0.008666422],"study_design_scores_gemma":[0.0002908197,0.00005898188,0.00009324683,0.00006748267,0.00000711788,0.0000303232,0.0000260567,0.0002672131,0.8836291,0.1064401,0.008789708,0.0002999063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9344707,0.0002217889,0.02269917,0.00401532,0.00001269011,0.00128291,0.00007289067,0.001052745,0.03617179],"genre_scores_gemma":[0.5649728,0.0001054099,0.4305876,0.0005250374,0.0002388037,0.0005160713,0.00004356231,0.00004868813,0.002962102],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4078884,"threshold_uncertainty_score":0.9726119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007862528649154108,"score_gpt":0.2357731349276934,"score_spread":0.2279106062785393,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}