{"id":"W2127096898","doi":"10.1093/nar/gkn179","title":"The CGView Server: a comparative genomics tool for circular genomes","year":2008,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1527,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Genome; Biology; GenBank; Comparative genomics; Sequence (biology); Genomics; Computational biology; Reference genome; Feature (linguistics); Sequence analysis; Sequence alignment; Genetics; Sequence database; Gene; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002760114,0.002275391,0.002347585,0.004338115,0.001326995,0.002444197,0.005058076,0.001402465,0.06760809],"category_scores_gemma":[0.003496313,0.002225164,0.001495016,0.003872881,0.0005667941,0.002587738,0.002730704,0.003502911,0.02871898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001025561,"about_ca_system_score_gemma":0.001800157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002297772,"about_ca_topic_score_gemma":0.001924461,"domain_scores_codex":[0.9990141,0.0002635927,0.00008626481,0.000232796,0.0002455326,0.000157687],"domain_scores_gemma":[0.9988033,0.0005424203,0.0001046047,0.0001827945,0.0001900405,0.0001768138],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002392031,0.0003648384,0.001994949,0.003980167,0.0003486964,0.0008616866,0.000878229,0.005423351,0.1066452,0.01484527,0.643977,0.2182886],"study_design_scores_gemma":[0.001325926,0.0005270696,0.00549846,0.0006745046,0.0002581896,0.002410974,0.0003721524,0.0819386,0.09164409,0.02743564,0.7873034,0.0006110681],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01076397,0.001550299,0.582337,0.0003477194,0.0005778147,0.0008405623,0.1018173,0.291179,0.01058638],"genre_scores_gemma":[0.03172154,0.00125995,0.6975222,0.0003049264,0.0001305549,0.002151208,0.2084225,0.05073091,0.007756216],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.06760809,"threshold_uncertainty_score":0.2261716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09087942816515893,"score_gpt":0.3477091687792871,"score_spread":0.2568297406141282,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}