{"id":"W2127114793","doi":"10.1128/mbio.00679-15","title":"Burkholderia cenocepacia Lipopolysaccharide Modification and Flagellin Glycosylation Affect Virulence but Not Innate Immune Recognition in Plants","year":2015,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Trust; Cystic Fibrosis Canada","keywords":"Burkholderia cenocepacia; Flagellin; Microbiology; Biology; Virulence; Innate immune system; Pattern recognition receptor; Immune system; Bacteria; Immunology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002854881,0.0001242448,0.0001216143,0.00005398606,0.00004423596,0.00004441207,0.00005757598,0.000171634,0.000004950161],"category_scores_gemma":[0.00007514752,0.0001283093,0.00002405091,0.00005007147,0.0000389461,0.0000142581,0.00004502544,0.00007390411,0.00002302646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002009154,"about_ca_system_score_gemma":0.00003024386,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004039276,"about_ca_topic_score_gemma":0.0001244079,"domain_scores_codex":[0.9991801,0.00006803568,0.0002029535,0.0002895526,0.00008069321,0.0001786566],"domain_scores_gemma":[0.9996145,0.000007920394,0.00009185225,0.0001677437,0.00005037198,0.00006754604],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002467165,0.00002178005,0.0003175476,0.00000815387,0.000006048608,0.000002425941,0.00008288828,0.000006994776,0.9881498,0.000008558325,0.00003772403,0.01111135],"study_design_scores_gemma":[0.000622748,0.0001245128,0.007857544,0.00003299177,0.000005876514,0.00001453282,0.00005871364,0.0003862665,0.9900925,0.0000700431,0.0005603369,0.0001739036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988446,0.0002488866,0.0001742266,0.000113261,0.0002413474,0.0001692767,0.00004191848,0.00001499916,0.0001514821],"genre_scores_gemma":[0.9986235,0.0002520355,0.0004354267,0.00007926267,0.0001485352,0.000006291055,0.0003771635,0.00001421734,0.0000634903],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01093744,"threshold_uncertainty_score":0.5232301,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03743673283672354,"score_gpt":0.2591468580513008,"score_spread":0.2217101252145772,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}