{"id":"W2127200588","doi":"10.1186/1471-2164-13-684","title":"Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Agriculture and Agri-Food Canada","funders":"Genome Prairie; Genome Canada","keywords":"Biology; Shotgun sequencing; Linum; Genetics; SNP genotyping; Single-nucleotide polymorphism; Reference genome; Genotyping; Genome; Sequence assembly; Genotype; DNA sequencing; Population; Tag SNP; Computational biology; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001149406,0.0006218188,0.0006601133,0.001081314,0.0003717347,0.0008520562,0.0005139237,0.0007135787,0.001415392],"category_scores_gemma":[0.001338767,0.000268369,0.0008864437,0.0009888404,0.0002457375,0.0002823149,0.0004547347,0.0007590038,0.0007763736],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004623345,"about_ca_system_score_gemma":0.000474678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009687528,"about_ca_topic_score_gemma":0.002627363,"domain_scores_codex":[0.9991558,0.0001990111,0.00004609158,0.0002865198,0.000239653,0.00007297037],"domain_scores_gemma":[0.9993018,0.0002890814,0.00018125,0.00007412042,0.0001139965,0.00003975455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005858717,0.0001152808,0.004301928,0.0003440987,0.0002036223,0.0002370387,0.0001433145,0.002856571,0.9556428,0.0004177631,0.0005847966,0.03456696],"study_design_scores_gemma":[0.0003055353,0.001698313,0.1711488,0.0001714609,0.001158036,0.001961626,0.0001883471,0.06279534,0.7208747,0.003036079,0.03647968,0.0001821554],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7975965,0.002354632,0.1771051,0.0004302203,0.00006985305,0.0004217092,0.01610553,0.002105966,0.00381047],"genre_scores_gemma":[0.6148615,0.001391816,0.3283622,0.0006862055,0.00006975995,0.0007176399,0.04873583,0.0004333757,0.004741705],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001415392,"threshold_uncertainty_score":0.00607866,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.148284488456333,"score_gpt":0.2624903352905537,"score_spread":0.1142058468342207,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}