{"id":"W2127200588","doi":"10.1186/1471-2164-13-684","title":"Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Agriculture and Agri-Food Canada","funders":"Genome Prairie; Genome Canada","keywords":"Biology; Shotgun sequencing; Linum; Genetics; SNP genotyping; Single-nucleotide polymorphism; Reference genome; Genotyping; Genome; Sequence assembly; Genotype; DNA sequencing; Population; Tag SNP; Computational biology; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000129412,0.00008222165,0.0001099671,0.00001039773,0.00006500619,0.0000716399,0.00009712874,0.00006242873,0.00003743757],"category_scores_gemma":[0.00005768015,0.0000410697,0.00004512683,0.000196839,0.00002787002,0.000668111,0.00004403714,0.00004325083,0.0000061561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006566747,"about_ca_system_score_gemma":0.00002278259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000239892,"about_ca_topic_score_gemma":0.0003072294,"domain_scores_codex":[0.9992647,0.00005593147,0.0002556977,0.0001536542,0.00009737744,0.0001726721],"domain_scores_gemma":[0.999685,0.00007379716,0.0001250222,0.00006063862,0.00002669931,0.00002886283],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000011161,0.00002091933,0.05963257,0.000004056557,0.000002981992,8.983059e-8,0.001134937,0.000493163,0.9373319,0.0004375773,0.0000261267,0.0009044908],"study_design_scores_gemma":[0.0001045919,0.00004082733,0.6089385,0.000006458612,0.000006645996,0.000001123287,0.002355571,0.0005345544,0.3863221,0.001011511,0.0005454837,0.0001326086],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985785,0.0004214037,0.0002143923,0.00008138386,0.0001401266,0.0001738558,0.000009634678,0.00001206109,0.0003685761],"genre_scores_gemma":[0.9967228,0.00008770921,0.002377714,0.00006402451,0.0004229401,0.0000102671,0.0002053946,0.000001454636,0.0001077285],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5510098,"threshold_uncertainty_score":0.1674774,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.148284488456333,"score_gpt":0.2624903352905537,"score_spread":0.1142058468342207,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}