{"id":"W2127256752","doi":"10.1371/journal.pone.0043432","title":"Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Office of Naval Research; Natural Sciences and Engineering Research Council of Canada; Woods Hole Oceanographic Institution; National Defense Science and Engineering Graduate; Gordon and Betty Moore Foundation; U.S. Department of Energy; Fonds Québécois de la Recherche sur la Nature et les Technologies; National Science Foundation","keywords":"Prochlorococcus; Transcriptome; Biology; Proteome; Gene expression; Proteomics; Gene; Genetics; Cell biology; Synechococcus; Cyanobacteria; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001029232,0.0001098807,0.0001785518,0.00002199494,0.00003081429,0.00000858173,0.00009576181,0.0001093234,0.00003708943],"category_scores_gemma":[0.00002136923,0.0001029709,0.00003799563,0.00003826508,0.00003272064,0.000005989933,0.00004692722,0.0000484431,0.000003209678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008849885,"about_ca_system_score_gemma":0.00003289458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006724411,"about_ca_topic_score_gemma":0.000005291969,"domain_scores_codex":[0.9993401,0.00002047653,0.0001433388,0.000158407,0.000110489,0.0002271593],"domain_scores_gemma":[0.9996104,0.000003639918,0.00006309542,0.0001797117,0.0000428773,0.000100313],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001118156,0.0006676939,0.00007966971,0.0002029848,0.00005497694,2.88807e-7,0.00008630711,6.262021e-8,0.9986272,0.00008961832,0.000004366149,0.000074957],"study_design_scores_gemma":[0.0006374745,0.0002672849,0.00005480404,0.00004108734,0.00007668496,0.000003284933,0.00003298252,0.00004108878,0.9983434,0.0001584823,0.000214158,0.0001292637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974645,0.0003623193,0.0006337148,0.00007043646,0.00005213244,0.0002773501,0.00005096188,0.000009906502,0.001078651],"genre_scores_gemma":[0.9979722,0.000171112,0.001405443,0.00003208851,0.0001334577,0.00004040936,0.00004611147,0.00002039192,0.0001788186],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008998321,"threshold_uncertainty_score":0.419903,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009391178799239295,"score_gpt":0.1939398916621056,"score_spread":0.1845487128628663,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}