{"id":"W2127302438","doi":"10.1093/glycob/cwl010","title":"Elucidation of the CMP-pseudaminic acid pathway in Helicobacter pylori: synthesis from UDP-N-acetylglucosamine by a single enzymatic reaction","year":2006,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":165,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences","funders":"Genomic Health","keywords":"Flagellin; Enzyme; Biochemistry; Sialic acid; Chemistry; Acetylglucosamine; Nucleotide sugar; Glycosylation; Helicobacter pylori; Biosynthesis; Bacteria; N-Acetylglucosamine; Amino sugar; Glycan; Glycosyltransferase; Microbiology; Stereochemistry; Glycoprotein; Biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002455425,0.000173334,0.0002326897,0.00007821531,0.00005569115,0.00001333684,0.0002604314,0.0003144681,0.0001011454],"category_scores_gemma":[0.0003290179,0.0001357833,0.0001011474,0.0002145437,0.0001364955,0.000009113224,0.0001173937,0.0001487689,0.00003178658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005146609,"about_ca_system_score_gemma":0.00006237797,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007825691,"about_ca_topic_score_gemma":0.0009210751,"domain_scores_codex":[0.9984618,0.0002881454,0.0004252898,0.0003848669,0.0001434088,0.0002964897],"domain_scores_gemma":[0.9991196,0.00007073299,0.0001992103,0.0004883895,0.00008591706,0.00003616827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000144522,0.0001724756,0.003170358,0.00001161686,0.00002038708,8.010152e-7,0.0000181617,0.000007188412,0.9914783,0.00003488038,0.001377771,0.00356349],"study_design_scores_gemma":[0.0005661793,0.0001714043,0.02020857,0.00002154492,0.000007903015,0.000006791491,0.00003377638,0.00004045607,0.9459719,0.0001163041,0.03271499,0.0001401427],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971008,0.0004756057,0.0003165487,0.000420632,0.0002326142,0.000325755,0.0001404361,0.00001213987,0.0009754933],"genre_scores_gemma":[0.9982272,0.00004401014,0.0001600381,0.00009190214,0.0001766794,0.0000891788,0.0006552385,0.00002008415,0.0005356895],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04550642,"threshold_uncertainty_score":0.5537082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009384157761729904,"score_gpt":0.2220329077018456,"score_spread":0.2126487499401157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}